F27734

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27734

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F27734

Determination of introduced cDNA(s)

  • RAFL06-10-C01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-C01 - Resource: pda02971

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-10-C01 - full reading 
    TGACTCACAC CAAAAAGACG ACGATGGTTT CGTTTCGCTT CCCTTTCTCG 
    TTTTCTCAGC CCCCGCGTGC CACCACGTCA TTCTCCGGAT TCTCCATTTC 
    CGCTGTCGCT GTCTCCGTCA CCGTTGGCGC CGCAGCCGCC GGAGCTGCGA 
    TCGCGGCGTC CCGGAATCCC AGCCATCCGA TTCTAGAGTG GGCCTTCTCC 
    TCTCACCGTT CGTCTCTTTC ACCATGGGGA TCTATAACTC TAGCAGACGA 
    ATCCGTTGTC GAACCTAAGA CCGGTTTCTC GTTTCCCGCT TCAATCGGAG 
    ATTCCCGGCG ATTACTCGGC GTCGGCCTGA GGAAGAAGAG CTTACTGGGA 
    TTGAAGAACA TCGATGTCTA CGCCTTCGGC GTGTATGCTG ATTGTGATGA 
    TGTGAAGAAA CTTGTGGGAG ACAAGTACGC AAATCTTCCA GCTTCAGAGA 
    TCAGGGGAAA CAAGTCATTC ATGGATGATC TCATGGAAGC CGATATTAAG 
    ATGACGATAA GGCTACAGAT TGTCTACGGC AAACTCAACA TCCGATCCGT 
    GCGTAATGCT TTCCAAGAGT CTGTTGGAAA CAGACTCAAG AAGTTCGGTG 
    GCTCAGACAA TGACGAGTTG CTTCAAAGCT TCACTAGCCT CTTCAAAGAT 
    GAGTATAAGA TTCCAAGAAA CTCCACCATT GATTTGACAA AAGATCCGGG 
    CCATGTACTC AGCGTTGCAA TTGAGGGGAA CCATGTCGGG AGTGTGAAGA 
    GCCATCTCTT GTGTAGATCA ATCTTAGACT TGTACATTGG TGAAGAACCG 
    TTTGATAAGA ATGCAAGAGA AGATTTTCTA GACAATGCAG CTTCTCTAGC 
    CTTCGACAAC TAGTTCACAA CAAAATGTTG CTTTCTTTCT TTCTTAACGG 
    ATTCTCTATA TATACGGCAT AATGTTGAGG AATGTATTTG AAATAAATTG 
    CTTGGGGAAT TGGGTTTTGT TAGTCT

    Gene models with high sequence identity

    1. AT3G63170.1 [+] show detail - Chalcone-flavanone isomerase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Chalcone isomerase, subgroup 2.7e-42
    superfamily Chalcone isomerase 2.8e-26

    See the detailed result >

    AT3G63170.1

    Model type
    Protein coding
    Short Description
    Chalcone-flavanone isomerase family protein
    Computational Description
    Chalcone-flavanone isomerase family protein; FUNCTIONS IN: intramolecular lyase activity; INVOLVED IN: cellular amino acid derivative biosynthetic process; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT2G26310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR