F27737

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27737

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27737

Determination of introduced cDNA(s)

  • RAFL08-17-C21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-17-C21 - Resource: pda04936

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-17-C21 - full reading 
    ACAAAAGCAA TCTTCTACTC ATTTACTGTT CTGTTTCACT TTCTCTCTCT 
    CTGTATACTC TCTAAATGAT GGCAAAAAAC TGTAATTTAG TCAGTGTTCT 
    ATGTGTATTT TTGGTATTGA CCCTCTTTAA CAAACCCATC ACCGTCGCCG 
    GGCAGAATAT TCCGGCGGTG GGCTTGTTCA CCTTTGGTGA CTCCAACTTC 
    GACGCCGGAA ACAAACAGAC TCTCACCAAA ACCTTACTCC CTCAAACTTT 
    CTGGCCGTAT GGAAAATCCC GAGATGATCC CAACGGCAAA TTCTCCGACG 
    GCCTCATCGC TCCAGACTTC CTCGCTAAAT TCATGAGGAT TCCGATCGTG 
    ATCCCGCCGG CCCTTCAACC GAACGTCAAT GTCTCACGTG GAGCTAGTTT 
    CGCCGTCGCT GATGCTACTC TACTCGGAGC TCCGGTGGAA TCTTTGACTC 
    TGAATCAACA AGTGAGAAAG TTCAATCAAA TGAAAGCAGC AAATTGGAAT 
    GATGATTTCG TGAAGAAGTC AGTGTTTATG ATATACATTG GTGCAAACGA 
    TTACTTGAAT TTCACCAAGA ACAACCCTAA CGCCGATGCA TCTACTCAAC 
    AAGCTTTTGT CACTTCCGTG ACCAACAAGT TAAAGAACGA TATCAGCTTG 
    TTGTATTCAT CAGGAGCGAG TAAATTTGTG ATCCAAACCC TAGCTCCATT 
    GGGTTGCTTA CCCATCGTCA GACAAGAGTT CAACACCGGG ATGGATCAAT 
    GCTATGAGAA ACTCAACGAT TTGGCTAAAC AACACAACGA AAAAATTGGA 
    CCGATGTTGA ACGAATTGGC TAGAACAGCT CCTGCATCAG CTCCTTTCCA 
    ATTCACCGTC TTTGATTTCT ACAACGCGAT TCTTACTAGG ACGCAGAGGA 
    ACCAAAACTT CCGATTTTTC GTTACGAACG CATCGTGCTG CGGAGTTGGG 
    ACACATGATG CTTATGGTTG CGGTTTTCCT AACGTACATT CGAGGCTATG 
    CGAGTACCAA CGGTCTTACC TATTCTTCGA CGGACGTCAC AACACTGAGA 
    AGGCGCAAGA GATGTTTGGT CATCTTCTTT TTGGAGCCGA TACAAATGTT 
    ATCCAACCGA TGAACATCCG TGAGCTTGTC GTTTACCCTG CCGATGAACC 
    TATGCGTGAG TCTTGGGTGC CCCCAACGTC AGCCACCGTT CAACTCAGGG 
    AGAGCCGCGG TTACGAGTAT TACTGAGTCT CTAAAATCAA TATTTAGGGA 
    TCGATCGGGG TTTCTATAAG GGTTATGAGT CAAATTATAA CTGGATCAAT 
    ATCGGAATCT TGAGTAGTTT TAATTTCCAA TGTTTTCATG TTTCTCTAGT 
    GAGTTTTCCT C

    Gene models with high sequence identity

    1. AT1G54010.1 [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Lipase, GDSL 1.6e-41
    HMMPanther PTHR22835:SF39 1.10000029896149e-07
    HMMPanther PTHR22835 1.10000029896149e-07

    See the detailed result >

    AT1G54010.1

    Model type
    Protein coding
    Short Description
    GDSL-like Lipase/Acylhydrolase superfamily protein
    Computational Description
    GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G54000.1); Has 3090 Blast hits to 3062 proteins in 114 species: Archae - 0; Bacteria - 139; Metazoa - 0; Fungi - 0; Plants - 2943; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR