F27738

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27738

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27738

Determination of introduced cDNA(s)

  • RAFL06-15-I19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-15-I19 - Resource: pda03210

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-15-I19 - full reading 
    ACTCGGCGAA TTCTCTCGAG AAAACAAACT GAATTTTTTT GATCGAAGAA 
    GATCTAAAAA AAAAGATGGA GAGACGACAA GCGAAGATCC ATGTCTTTGT 
    ATTGATAGGT CTAATTCTAT TGAATTCAAT CAATCAAATC TCATCTCTCT 
    CTGTAACGGT GAACGACGAA GAATGTGTCC AAGAGTACGT CCTTTACGAA 
    GGCGACACTG TTTCCGGTAA CTTCGTCGTC GTCGATCATG ATATCTTCTG 
    GGGATCCGAT CATCCTGGTT TGGATTTCAC GGTGACGTCA CCAGCTGGGA 
    ACATTGTACA GACTTTAAAG GGAACATCTG GAGATAAGTT TGAGTTTAAG 
    GCTCCAAAAA GTGGAATGTA CAAATTTTGT TTCCACAATC CTTATTCTAC 
    TCCTGAAACT GTCTCCTTTT ATATTCATGT TGGTCATATT CCTAATGAGC 
    ATGACTTAGC CAAAGATGAA CATTTGGACC CGGTAAATGT TAAGATAGCT 
    GAGTTGAGAG AGGCTTTGGA ATCTGTTGTT GCTGAGCAGA AGTATTTGAA 
    AGCTCGTGAC ACTCGTCACC GTCATACGAA TGAGAGCACG AGAAAGCGAG 
    TGATATTCTA CACAGTAGGA GAGTACATTT TCCTTGCCGC AGCTAGTGGA 
    CTTCAAGTTC TCTACATCCG CAAGCTCTTC AGCAAGTCGG TAGCATACAA 
    CAGAGTTTGA ACATAGCAAA ACCTCAGAGC GAGGTCTTGT GTCCAGTTTA 
    TGTTTGAATC GGTGATCAAA ACACAATCCT AAACAGTGTT AGTTAATTTA 
    AAAGCTTCAA TAGCGAAAGA CTTACTTTTT GTTTTTGGTT TCTACACTTT 
    TATAAGTTTA CTAATGCAGA ACTTGATGAA GCTTTTTTCT G

    Gene models with high sequence identity

    1. AT3G22845.1 [+] show detail - emp24/gp25L/p24 family/GOLD family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther COATED VESICLE MEMBRANE PROTEIN 3e-109
    HMMPanther COPII-COATED VESICLE MEMBRANE PROTEIN 3e-109
    superfamily Supernatant protein factor (SPF), C-terminal 2.5e-06
    ProfileScan GOLD 16.244
    HMMPfam emp24/gp25L/p24 4.1e-41

    See the detailed result >

    AT3G22845.1

    Model type
    Protein coding
    Short Description
    emp24/gp25L/p24 family/GOLD family protein
    Computational Description
    emp24/gp25L/p24 family/GOLD family protein; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT3G07680.1); Has 1821 Blast hits to 1821 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 918; Fungi - 476; Plants - 264; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR