F27748

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27748

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27748

Determination of introduced cDNA(s)

  • RAFL14-67-F05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-67-F05 - Resource: pdz88483

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL14-67-F05 - 5 prime EST 
    TCTCTCAACA ACTACTTGTT TAGAGAGAGT CCCACCACCA CCACTACCAC 
    AATCCCAATG GCTTCACCAA CTCTTACTCT CCTCCTCCTC CTCACCACCG 
    TCTCCTTCTT CATCTCCTCC TCCGCAGATC CTGACATGCT TCAAGATCTC 
    TGCGTCGCTG ATCTTCCCTC TGGAATCAAA ATCAATGGCT TCCCTTGCAA 
    AGACGCAGCT ACAGTCACAT CAGCCGATTT CTTCTCACAA GGATTAGCTA 
    AACCAGGTCT TACCAACAAC ACATTCGGTG CCTTAGTCAC AGGAGCTAAC 
    GTTATGACAA TCCCAGGACT CAACACACTT GGTGTCTCCC TCTCTCGTAT 
    CGACTACGCA CCAGGAGGCT TAAACCCACC TCACACCCAC CCACGTGCCA 
    CTGAGGTCGT TTTCGTCCTC GAAGGAACAC TTGACGTTGG GTTTCTCACT 
    ACTGCCAATA AGCTAATCTC TCAATCTCTC AAGAAAGGAG ATGTTTTTGC 
    TTTNCCCNAA NGGACTTGTC CATTTCCAGA A

    Gene models with high sequence identity

    1. AT1G09560.1 [+] show detail - germin-like protein 5
      E-value: 0; Score: 99.25

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL14-67-F05 - 3 prime EST 
    GAACAAAAAA TAATATGGAT TATACAAGAA GAGGAATACA TGAGACTATG 
    GAGCTCAAAT GCACACTGAA GATCATCAGC TTATTGTTCC TTTTTTATTA 
    CAGAAGAAAA ATCAAAGAAG ATAAAAAGAT CTTCCCTTTA GAAAAAAACA 
    GAACTGTAGT AATGAACTAT AAAGGAAGGG TGATGATCAT TTCTTGGGTT 
    GGAACTTGGA TTTGATGTGT TTAAGAGTTC CTGGAGAAGT CTGAAAGGCT 
    TGAGCCAAGA TGTTGTCAGG AACAGGAGGA GTAGAACCAA ACAAAGTAGC 
    ACCAAGAGAT TGAGTTCCGG GAAGCTTGAC TATTGAAAGC TGGAATAACA 
    GAAGCAGGGA CCCTCACCAT TGTTCTTCTG GAAATGGAAA AGTCCTTTGG 
    GGAAAGCAAA ACATCTCCTT TCTTGAGAGA TTGAGAGAT

    Gene models with high sequence identity

    1. AT1G09560.1 [+] show detail - germin-like protein 5
      E-value: 0; Score: 97.27

    AT1G09560.1

    Model type
    Protein coding
    Short Description
    germin-like protein 5
    Curator Summary
    germin-like protein (GLP5)
    Computational Description
    germin-like protein 5 (GLP5); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to cold; LOCATED IN: cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 10 (TAIR:AT3G62020.1); Has 1766 Blast hits to 1756 proteins in 200 species: Archae - 0; Bacteria - 219; Metazoa - 1; Fungi - 67; Plants - 1458; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR