F27826

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27826

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Seed::light green

Original: F27826

Determination of introduced cDNA(s)

RAFL09-07-H21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-07-H21 - Resource: pda05178

full reading [+] show sequence

AACCAGAAAA GTGTACTCTA CTGCAACTAC TTCTTCTCTA CTTCTCTACC 
TTAAAACTTC CCCAACCATT TTCTTCTTCA AATCATCATC ATCATCCCTC 
GTACAAAGAA AATGGCCATG AGCATACTCG CGAAGATCTT TCTCGTCTTT 
GCCATCTATT GCGCTATCGA TCCCTTCAGT CACAGCTCCA TTTCCAAGTT 
CCCGGATTTC AAAACTTACA AGATTGACAT GCCTCCGTTA TCGTCACTTC 
CAAAGGAGAG AGACCGCCAG AATCTGTTGC AGAATTCAGA GATCAGGTTT 
CTTAACGAGG TTCAAGGTCC CGAGAGCATT GCTTTCGATC CGCAAGGTCG 
TGGTCCTTAT ACCGGAGTCG CCGACGGTCG AATTCTCTTT TGGAATGGCA 
CTCGTTGGAC AGATTTCGCA TATACTTCGA ACAATCGGTC AGAGCTATGT 
GATCCTAAGC CATCGCTTTT GGATTACTTA AAGGATGAAG ATATCTGTGG 
TCGGCCTTTA GGTCTTCGAT TCGACAAGAA AAATGGGGAT TTGTACATTG 
CAGATGCGTA TTTGGGGATA ATGAAAGTTG GTCCGGAAGG AGGTTTAGCA 
ACTTCTGTTA CAAACGAGGC TGATGGTGTG CCTTTGAGAT TTACCAATGA 
TCTTGACATT GATGATGAAG GCAATGTTTA CTTTACTGAT AGCAGCTCTT 
TCTTCCAACG AAGGAAATTT ATGCTTTTGA TTGTCTCGGG GGAAGACAGT 
GGGAGGGTGT TGAAATACAA TCCAAAAACA AAGGAGACTA CCACTCTCGT 
GAGAAATCTC CAGTTTCCTA ACGGATTATC CCTCGGCAAA GACGGCTCCT 
TTTTCATCTT TTGTGAAGGA TCTATTGGAA GATTACGGAA ATACTGGTTG 
AAAGGGGAGA AAGCTGGAAC GTCAGAAGTG GTAGCTCTAT TACATGGGTT 
CCCAGACAAC ATCCGCACAA ACAAAGATGG AGATTTCTGG GTGGCGGTGC 
ACTGCCACAG AAACATATTC ACACACTTGA TGGCGCATTA CCCGAGGGTG 
AGGAAGTTCT TTCTGAAGCT GCCGATATCA GTGAAGTTTC AGTACTTGCT 
GCAGGTAGGT GGTTGGCCTC ATGCTGTAGC TGTGAAGTAC AGTGAAGAAG 
GGAAAGTGCT AAAGGTGTTG GAAGATAGTA AAGGGAAAGT GGTGAAGGCA 
GTGAGTGAAG TGGAGGAGAA AGATGGGAAG CTTTGGATGG GAAGTGTATT 
GATGTCCTTC ATTGCCGTAT ATGACTTGCC TTAGTTCGTT TCTTTTTCTA 
TTCAAATTTG TATATTTCTA GTTTGGCTAT GGGATTGCAA TATGCATCTC 
GTTATCAAAC TATATTTGAC GTAATCAATT CAAACACAAA CAATTACTAA 
ATACAGTATC CTTTTTGCC

Gene models with high sequence identity

AT1G08470.1 [+] show detail - strictosidine synthase-like 3
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Six-bladed beta-propeller, TolB-like	6.4e-44
HMMPanther	STRICTOSIDINE SYNTHASE	2.9e-199
HMMPanther	Strictosidine synthase	2.9e-199
superfamily	Calcium-dependent phosphotriesterase	1.5e-53
HMMPfam	Strictosidine synthase, conserved region	2.3e-29

See the detailed result >

AT1G08470.1

Model type: Protein coding
Short Description: strictosidine synthase-like 3
Curator Summary: Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.
Computational Description: strictosidine synthase-like 3 (SSL3); FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT5G22020.1); Has 1252 Blast hits to 1238 proteins in 269 species: Archae - 3; Bacteria - 366; Metazoa - 225; Fungi - 17; Plants - 480; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
Link: InterPro Scan - TAIR