F27913

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Seed::deep red
Seed::light blue

Original: F27913

Determination of introduced cDNA(s)

RAFL09-87-G05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-87-G05 - Resource: pda09973

full reading [+] show sequence

TGACTGAAGC TGGTATGGTG ACCCACGCAT TATTACTGTG TTACATCGAG 
GACCGCTTTT TCAATTACTC AAGCATATAC TATTATGGAA TGGAAGACGA 
TGTGATGTAC CCTAGCTACA TGGTTATCTT GACGTCGCTA ATAGGATTGG 
CTGTGGTGAG AAGACTGTTT GCTGACCACC GAATTGGACA AAAGGCAGTC 
TGGATCTTGA CCTGTCTGTA TTCAGCAAAG TTGGCTATGC TCTTCCTATC 
ATCGAAATCA ATTGTATGGG TGTCTGCAGC TCTATTACTG GCTGTTTCCC 
CTCCCTTACT TCTATACAAA ATGTGCAGGG AGAAGTCGAA ATCTGCCTCT 
AAAATGAAGC CATGGCAAGG TTATGCTCAT GCCGTAGTGG TTGCTGTCTC 
TGTCTGGTTT TGCCGGGAAA CAATATTTGA TGCTCTACAG TGGTGGCATG 
GAAGACCTCC GTCTGATGGT TTGCTTCTTG GTTCCTGCAT CGTTTTAATT 
GGTCTGGCCT GTATACCAAT TGTTGCCTTC CACTTTTCGC ATGTCCTGTC 
AGCTAAGAGA AGCTTGGTAT TAGTAGTGGC AACTGGATGC ATGTTTATTC 
TGATGCAGCC ACCGATGCCT ATGACGTGGA GTTACCATTC AGATATGATC 
AAGGCCGCTC GCCAGTCAGC TGATGACATT TCCATCTATG GATTCATGGC 
ATCCAAACCG ACTTGGCCGT CTTGGTTGCT TATTGTGTCA CTCCTCTTGA 
TTCTTGCTGC TGCCACATCT CTTATCCCAA TCAAATACGT AGTAGAACTG 
AGAGCATTTT ACTCCATTGC CATGGGTTTA GCTCTCGGTG TTTATATATC 
AGCAGAGTTC TTTCTACAAG CTGCTGTTCT ACATGCCCTG ATCGTTGTAA 
CACTGGTGTG TGCCTCAGTT TTTGTCATCT TCACCCATTT TCCATCTGCC 
TCAAGCACAA AGCTGCTTCC CTGGGTGTTT GCTCTTCTCG TGGCTCTATT 
TCCTGTGACA TATTTGTTAG AAGGGCAAGT CAGAATTAAA AACGATCTCA 
ACGAAAATGT TACCTGGGGT TGGGACACAA GGGAGGAGGA TAAGAAAGTC 
ACAACCATGT TGGCCATTGA AGGTGCAAGA ACATCTCTTC TAGGTCTCTA 
TGCAGCGATA TTTATGCTTA TAGCTCTCCT GATTAAATTT GAGCTCACTT 
CGCTTTTGCG TGAGAAATTC TCTGAGAGGA GTGGTCAGTC AAAAACCCAA 
GGAGGCGCAA GAGGGATTTT CCCGACACGA ATGAGGTTGA TGCAGCAACG 
CCGAGCCACC TCGATCCAAA GCTTTGCAGT AGAGAAAATG TCAGAAGAGG 
GAGCAGCATG GATGCCTTCT GTTGGTAATG TCGCCACCAT CATGTGCTTT 
GCCATATGCT TAATCCTCAA CATCCACCTC TCAGGCGGCT CAAGCCAAGC 
GATATTCTTC CTGGCTCCAA TCTTACTTCT CCTGAACCAA GACTCTGATC 
TCTTATCCGG GTTTGGTGAT AAACAGAGAT ACTTCCCGGT TACAGTAGCC 
ATATCAACAT ATTTGGCATT ATCCTCGCTC TACACTGTAT GGGAAGAAGT 
TTGGTTTGGT GGAAACACAG GTTGGGGAGT CGAAATTGGA GGCCGTGAAT 
GGTTTTTTGC GGTGAAGAAC CTGGCTCTCC TAATACTCAC AGCACCAGGT 
CACATCATAT TCAACAGGTA CGTTTGGAGT TACACCACCA AACACACAGA 
CGCGTCGCCG ATGCTGACCG TGCCACTTAG CTTTGCAGCC GTAATAATAA 
CAGACGTGTT TCAAGTTAGG GTTCTGGGAG TTTTAGGCAT TGTTTACTCT 
GCGGCTCAGT ATGTGATATC TAGGCAACAA TATATGAAAG GGCTGAGGTA 
TATTTAGACA GTCGTAGGAT TGATTAGTAA TGTTTTCGAC CCTTTTTGTA 
ACAGAATTTG TGAAACAGTG TTTTCATTTC CCAGCTTTGT TTCTCAGTGG 
ATGCATTGGA AATTGCCAAT ATACGACGTT TGAACAACTT

Gene models with high sequence identity

AT5G13390.1 [+] show detail - no exine formation 1
E-value: 0; Score: 99.56

InterPro Scan Digest

See the detailed result >

AT5G13390.1

Model type: Protein coding
Short Description: no exine formation 1
Curator Summary: Required for normal pollen development and lipid accumulation within the tapetum
Computational Description: NO EXINE FORMATION 1 (NEF1); LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR