F27915

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27915

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F27915

Determination of introduced cDNA(s)

  • RAFL07-13-I05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-13-I05 - Resource: pda04218

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-13-I05 - full reading 
    ACGCGTGAGA TATAAAAGAA GATCCTTTGC AGTTTCTCTG TTCTTGCTCC 
    TTCTTCTTCA TCTCCCTTTA TTGATACTGT CTGAGTAATA ATAAAAATTC 
    ACTCTTTTTG TCTTCTCAAG ACAGATTTCA AAATAGAAAT CATTCTCCTT 
    TTTTCTTTTT GAAAATTTCG AGTGATTTAA GGAGGGAAAA TAAAGACAGA 
    AACAAGAACA AAAGCATCGT TTGCGAATAA GACTTCTCGT ACTCTGTTTT 
    CTTTTCTCGT GTTCTTATGA CAGATTTATA AAAAAGATTA GGTTTTTGTC 
    TTGTCTTGGC GATAATGCCT AGAGAGTGTT TTAAAGATTT GATTTAAATA 
    CTCTTTTATG TTAACTACGA TGCAAAGAGT ACACAACAAA CCGATTGATT 
    CTATCGGAGG TTTTAAGCAT TTGGTAAAAC AGAGTAACGG CGGTGACGGT 
    GGAGTGACGG CGACGGATAT GCAAGAACCG AGCATCGAGA CTGATAAGCT 
    TAGCTACGAG ATTTTCTCTA TTCTCGAAAG CAAGTTTCTT TTCGGGTATG 
    ATGATGACCT GAAGCTTATG GAATCAAGAA GCAGAGACCC GAGTCCAGAG 
    CAAGAAACGG CATCACCGGC GATGGTGGAA GCTTTAAACG GCGTTGTTCC 
    GGGTACAGTT AAGAACCAGA GAGGTAAAGT TTGTGTTTTG AGTATCGATA 
    GTGGTGGAAT GAGAGGGATT ATACCTGGAA AAGCTTTGGC TTATCTGGAA 
    CATGCTCTGA AATCGAAATC GGGTGACCCG AATGCTCGAA TCGCTGATTA 
    CTTCGACGTA GCTTCCGGTT CCGGTATCGG TGGGATTTTC ACGGCGATGC 
    TTTTTGCGTC GAGCGATGGT AACCGTCCGA TCTTCAAAGC GGAAGACACG 
    TGGCGGTTTT TAGCTATGAA AGGTAAAAGC TTTTACAACA AATCACCACC 
    GGGGATACTA AACAGGGTTA TGAAAACCGG GTCGGGTGGT TCGGGTGGGT 
    CAGGTTCGAA GCTTGAGAAA GCGATGAAGG AGTCTTTCGA AGAGCTTACG 
    CTTAAGGATA CGCTTAAACC GGTTTTGATT CCTTGTTACG ACCTCACGAG 
    CTCTGCACCG TTCTTGTTCT CACGTGCTGA TGCGTTGGAA ACGGACGGTT 
    ATGATTTTAA GCTGTGGGAA GTTTGTAGAG CTACTTGGGC TGAGCCAGGA 
    GTGTTTGAGC CGGTGGAGAT GAGATCAGTT GATGGTAAGA CACGGTGTGT 
    AGCTGTTGAT GGTGGTTTAG CAATGAGTAA TCCAACGGCT GCAGCGATTA 
    CTCATGTGTT GCATAATAAG CAAGAGTTTC CTTTTGTTAG AGGTGTTGAG 
    GATTTGCTTG TGTTGTCACT TGGTACGGGA CAGTTGGTTG ATGTTAAGTA 
    TGATTGTGAT AAGGTTATGA AGTGGAAGGC TAAGCATTGG GCTCGACCTG 
    CGGTTCGGAT TTCTGCTGAT GGAGCAGCTG ATACTGTGGA TCAGGCTGTT 
    TCCATGGCGT TTGGTCAGTG TAGGAGGAGT AACTACGTCC GTATTCAGGC 
    GAATGGATCA AGCTTTGGTC CGTGCAAACC AAACATAGAC ACAGATGCGA 
    GTCCAAGCAA TGTGAATATG CTTGTGGGAG TAGCAGAGGA GATGCTGAAG 
    CAGAAGAATG CAGAGTCTGT TCTGTTTGGT GGTAAGAAAA TCAATGAAGA 
    AAGCAATTAT GAGAAGCTGG ATTGGTTAGC CGGTGAACTA GTGCTAGAAC 
    ACCAGAGGAG GAGTTGTAGA ATCGCTCCCA CTGTAGCGTT CAAGCAATCC 
    GGCGACAGAA GAGTCGATCA ACAGACCATT TTCAAGGATA TTGATTGTAT 
    GTTTTGAATA TTTTTAAATT GTATAGATTT GTGTTTAAGT CCAGAAGAAA 
    GCAACATTAT ATTC

    Gene models with high sequence identity

    1. AT2G39220.1 [+] show detail - PATATIN-like protein 6
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Patatin 8.3e-21
    superfamily Acyl transferase/acyl hydrolase/lysophospholipase 2.5e-77

    See the detailed result >

    AT2G39220.1

    Model type
    Protein coding
    Short Description
    PATATIN-like protein 6
    Computational Description
    PATATIN-like protein 6 (PLP6); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: patatin-like protein 6 (TAIR:AT3G54950.1); Has 1294 Blast hits to 1292 proteins in 232 species: Archae - 0; Bacteria - 327; Metazoa - 139; Fungi - 43; Plants - 635; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR