F27925

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27925

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27925

Determination of introduced cDNA(s)

  • RAFL09-65-I16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-65-I16 - Resource: pda08620

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-65-I16 - full reading 
    AGAAGCCTAA AACCTTCACC ACCAAATCGG TGCCTCCTTG AATAGTCGCC 
    GCCGTCGTCT ATCATCGCCG CTTGTGACTC CGATGAGAAG CTAGGTTATT 
    GAATCAGAGA TTATGGCTGC TTCAATTTCA AGAAGGATTT TTCGCACTTT 
    TGGATCCTTT TCAGCTCTAG GACGTTCCTC TTCACCAAAT TTGTCTGCGA 
    ATACATCTGG AAATGGTTTA GCTTCTCTTA CTAATGATCT AAAGTATGGA 
    ATGGCTTTAC TTTCCAACCG AAAGCTCTCC ACTTCTATTT TGACTCCTGA 
    TGATTCATTT CCTTCTGATT TACTTACCAA AAAGACTGTG CTTACACCAG 
    ACCGAACCAT AGGACAATAT CAAGACTTGG TCATTCCAGT GACTAATTTT 
    CAGAACGAGG AAAAGGGTTT CATGGTTTTA GCAGGTGATG TCTTTGATGT 
    TCCAATAAGG AAAGATATCA TTCACAATGT CGTGCGATGG CAGCTTGCGA 
    AACGCCAGCA GGGAACTCAT TCGACCAAAA CGTTAAGTGA GGTTAGTGGA 
    ACTGGTAGAA AGCCATGGAA TCAGAAGGGT ACAGGTCGAG CTAGACATGG 
    TACACTACGT GGTCCGCAGT TCCGAGGTGG TTGTGTAATG CATGGACCCA 
    AACCAAGAAG CCATGCCATA AAAATGAATA AGCAGGTTCG ACGGCTTGGA 
    CTGAAAATAG CATTGACAGC TCGAGCCGCA GAAGGAAAAC TCCTCGTGTT 
    TGATGATTTG GGATTGCCTA CGCATAAAAC AAAGAACATT GTGAACTATT 
    ACAACCAAAT GGAGAACACA AAGAAAGTCC TTGTTGTAGA AGGTGGTCCT 
    ATTGATGAAA AGCTGAAGCT AGCCACCCAA AATCTACACT ATGTCAACAT 
    AATTCCATCA ATAGGGCTAA ATGTTTACAG CATTCTGCTA CACGATACGC 
    TTCTGATGTC CCGTGATGCT GTGAATAAGA TCGTTGAGCG TATGCACACT 
    CCTATTAACC GTTGAAGAGA CAACAATGTC TTAAAATGGC ACTCTCAATA 
    AGAATACTAG ATCACAAGGA ATCCCGCATG TAGTATCTGT ACCGGTTCAT 
    TGTTTGTTAG CTTTTTGGTC TGGTTTTGCA ACATAGAATG GTGAAGGATT 
    GAGTTTTAAA ATAATGAATG GTGAT

    Gene models with high sequence identity

    1. AT2G20060.1 [+] show detail - Ribosomal protein L4/L1 family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Ribosomal protein L4 2.5e-92
    HMMPanther Ribosomal protein L4/L1e, bacterial-type 2.5e-92
    HMMPfam Ribosomal protein L4/L1e 2.3e-64
    superfamily Ribosomal protein L4/L1e 5.9e-71
    Gene3D no description 1.4e-38

    See the detailed result >

    AT2G20060.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L4/L1 family
    Computational Description
    Ribosomal protein L4/L1 family; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: ribosomal protein L4 (TAIR:AT1G07320.4); Has 8236 Blast hits to 8236 proteins in 2694 species: Archae - 70; Bacteria - 5573; Metazoa - 121; Fungi - 129; Plants - 100; Viruses - 0; Other Eukaryotes - 2243 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR