F28047

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28047

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28047

Determination of introduced cDNA(s)

  • RAFL11-04-L09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-04-L09 - Resource: pdz88393

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL11-04-L09 - 3 prime EST 
    ACAACAACAA TCACGGTCCA TTCGATTCAA CACTCTTTAG AATTACAAAA 
    CACTTTATGT AATAATGTAA GAATGTGAAA GAAGAGCCTC TAATTGAGTC 
    CGAGACTCCC TCACTTACTC ACACACACAT TTTAGTTAAC GGTGACTTTA 
    CCGACCATAC CAGCACCCTG ATGTGGCGCA AAGTAAAAGC TGTAAGTCCC 
    TGGCTCGGTC AAAGCAACCT CGTACGTTTC TCCCGCACCG TTGAGTAGAT 
    CTTGCTCGTC CATCGAGATC TTGGCCACGT CGACGCCACT TGGGATTTCG 
    TTTTCATTGA AGACAAAATT GTGTGGGTTT CCAGCGTTGT TCTTGAACAC 
    AATCTTCTCT CCTTTAGCCT ATAGAGAAGT CGTTGGGAAT AAAAGCTAAC 
    GACCCATC

    Gene models with high sequence identity

    1. AT1G20340.1 [+] show detail - Cupredoxin superfamily protein
      E-value: 0; Score: 97.79

    AT1G20340.1

    Model type
    Protein coding
    Short Description
    Cupredoxin superfamily protein
    Curator Summary
    recombination and DNA-damage resistance protein (DRT112) One of two Arabidopsis plastocyanin genes. Predominant form, expressed 10x higher than PETE1. PETE2 is thought to be post-transcriptionally regulated via copper accumulation and is involved in copper homeostasis.
    Computational Description
    DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112 (DRT112); FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: response to UV, response to chemical stimulus, copper ion homeostasis, negative regulation of translation, response to copper ion; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: plastocyanin 1 (TAIR:AT1G76100.1); Has 1286 Blast hits to 1278 proteins in 235 species: Archae - 146; Bacteria - 416; Metazoa - 0; Fungi - 2; Plants - 206; Viruses - 5; Other Eukaryotes - 511 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR