F28117

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28117

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28117

Determination of introduced cDNA(s)

  • RAFL08-13-N23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-13-N23 - Resource: pda04792

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-13-N23 - full reading 
    AAAAAAAAAA ACTCAGGAAC CGCCGACTTA AGAATTTCTT CTTCATCATC 
    TCTCCAATAT CGCCGATTAT ATATAAATGA CTCTTCGATT CTGTTTCTTC 
    TTCGTCGTCA TCGCCGGCTT AGGGTTTTCT CTATAAGCAA ATCTTATCTT 
    CTCCTTTTCC TCCGTTTTTT TCTGGTCAGC TTTTGCTTTT AGATTACCCT 
    TGTTGCCTGC GATCGATCTG AAAAAAGAGG AACTTTATCT TGCTGACGGC 
    TGTTATAAAA AGACGTGGCA TTTCTTCTCT GATTGTGTTT ATTTTTATGA 
    CGGAGAAGAT GAACACACTT GTAATCTATC AGACTCTAAC TGTTACTGTT 
    GGTGTTTTCT AATGCTGTCG GCAAGACACT ATCTTTAGGA CTGCTAGGGA 
    GTTTAGAGGT TACACAGTTG ACTTTTTCTA TCAAGGTTAT AGGTTTAGTA 
    TTGTTAATAT ATAGAAATGG AAGCCAAGAT CGTCAAGGTG TTGGATAGTA 
    GTAGGTGTGA AGATGGATTC GGAAAAAAGA GGAAGCGCGC AGCAAGCTAT 
    GCTGCATATG TTACTGGAGT TTCGTGTGCA AAGCTGCAAA ATGTGCCCCC 
    ACCGAACGGG CAGTGCCAAA TTCCTGACAA AAGAAGAAGG CTGGAAGGTG 
    AAAACAAGCT TAGCGCTTAC GAGAATCGCT CTGGGAAGGC GCTGGTCAGA 
    TATTACACTT ATTTTAAGAA GACTGGAATC GCTAAACGTG TTATGATGTA 
    TGAGAATGGC GAATGGAATG ATTTGCCTGA GCACGTTATA TGCGCCATCC 
    AGAATGAATT AGAAGAAAAG AGCGCCGCAA TTGAGTTCAA GTTATGCGGT 
    CACAGTTTTA TTTTGGACTT CTTGCACATG CAAAGACTAG ACATGGAAAC 
    AGGAGCAAAA ACCCCTCTTG CATGGATTGA CAATGCAGGA AAGTGCTTTT 
    TCCCTGAAAT TTATGAGAGT GATGAAAGGA CCAATTACTG CCATCATAAA 
    TGTGTGGAAG ACCCAAAACA GAATGCTCCT CATGATATCA AACTTCGCCT 
    AGAGATTGAT GTTAATGGTG GCGAGACACC GAGGTTAAAT TTGGAGGAGT 
    GCAGTGATGA GTCTGGTGAT AATATGATGG ACGATGTTCC CCTTGCTCAA 
    CGATCTTCAA ATGAGCACTA TGACGAGGCT ACGGAGGATA GCTGCAGCCG 
    CAAGCTCGAA GCTGCTGTTT CGAAATGGGA TGAGACTGAT GCTATAGTCG 
    TCTCTGGTGC CAAGCTTACG GGAAGCGAAG TACTTGATAA AGATGCAGTA 
    AAAAAAATGT TTGCTGTAGG CACAGCTTCT CTAGGACATG TACCAGTGCT 
    GGATGTGGGC CGTTTTTCCA GTGAGATTGC TGAAGCTCGT CTAGCACTTT 
    TCCAGAAGCA GGTTGAGATC ACTAAGAAAC ATCGAGGGGA TGCAAACGTT 
    AGGTATGCCT GGCTTCCTGC AAAGAGGGAA GTTTTATCAG CAGTGATGAT 
    GCAAGGACTT GGAGTTGGTG GAGCATTTAT CAGAAAGTCC ATCTATGGTG 
    TTGGGATCCA TTTAACCGCT GCAGACTGCC CTTATTTCAG TGCTAGATAC 
    TGTGATGTTG ACGAAAACGG AGTACGTTAC ATGGTTTTAT GCCGTGTGAT 
    TATGGGGAAT ATGGAGCTTC TTCGTGGTGA TAAAGCTCAG TTCTTTTCTG 
    GTGGAGAAGA ATATGACAAT GGAGTCGATG ACATTGAGAG TCCAAAGAAT 
    TACATTGTCT GGAACATCAA TATGAACACA CATATATTCC CGGAATTTGT 
    TGTTAGGTTC AAGCTGTCTA ATCTCCCCAA TGCTGAAGGT AATTTGATTG 
    CTAAGCGTGA TAACTCAGGG GTCACTTTGG AAGGACCTAA GGATCTTCCT 
    CCTCAATTGG AGTCAAACGG AGCAAGAGGT TCAGGAAGTG CAAACAGTGT 
    TGGTTCAAGC ACTACAAGAC CCAAATCTCC ATGGATGCCA TTTCCTACTC 
    TGTTTGCAGC AATCTCACAT AAGGTTGCAG AGAACGACAT GTTGTTGATC 
    AATGCTGACT ACCAACAACT GAGGGATAAG AAGATGACGA GAGCGGAGTT 
    TGTCAGGAAA CTGCGGGTGA TTGTAGGAGA TGATCTGCTA AGGTCCACCA 
    TAACAACCCT TCAAAACCAG CCAAAGTCGA AGGAGATTCC AGGAAGCATC 
    AGAGACCATG AAGAAGGTGC AGGTGGATTG TAAGTAAAGT GGATGATGAT 
    GATGACGAAT ATCAAAAGGA AGCTGCTTTT TATCTATCTA CCTGCCTTTG 
    TGGTTCTCCT TTTGACTTTT TCTAATTTTA GACTTTTGGT TTTGGGTCGG 
    GTCGTTGGTA GAGTTTAAAA TGTGTCGACT TTTCTTTCTG TCGTGAAAAA 
    TCGTACTATA TTATATGATT CTACTTAGTC AATGAAATAA AAAAAAAAAA 
    AAAA

    Gene models with high sequence identity

    1. AT1G32230.2 [+] show detail - WWE protein-protein interaction domain protein family
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam RST domain of plant C-terminal 9e-30
    HMMPfam WWE domain 3.5e-10
    HMMPfam Poly(ADP-ribose) polymerase, catalytic domain 5.3e-07
    ProfileScan WWE domain 12.098
    ProfileScan Poly(ADP-ribose) polymerase, catalytic domain 45.122
    superfamily ADP-ribosylation 8.6e-26

    See the detailed result >

    AT1G32230.2

    Model type
    Protein coding
    Short Description
    WWE protein-protein interaction domain protein family
    Curator Summary
    Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.
    Computational Description
    RADICAL-INDUCED CELL DEATH1 (RCD1); CONTAINS InterPro DOMAIN/s: WWE domain (InterPro:IPR004170), Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: similar to RCD one 1 (TAIR:AT2G35510.1); Has 178 Blast hits to 176 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR