F28120

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28120

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28120

Determination of introduced cDNA(s)

  • RAFL09-22-J23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-22-J23 - Resource: pda05647

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-22-J23 - full reading
    AAATGAAAAT CGCTGGGCTC TCGCTGTCAA CGCTGGGCGT GAGTGAGATC 
    TAACAATCGG TAGCGAATTT TGTAAATTTT GTTCCGGTTT TGAAGTCTCA
    ATCTCGGGGT TCCGGTTTTA GCAACTACTT CTTCTGACAT TTCAGCTGTT
    CTAGTTGATC TTTATATACT TTATATGATC TGGGATTTTG AAGAGTTTTT
    AGGGAGGAAC CAAAATTTCT GAGAGAGAAA AATGAAGTTA TCGAGCTGCG
    TTTTGATCTT CCTTCTATGT AACACATTCT CCTCGATTTC TGCTTTCCGT
    CTGAGTCGGA GTCAACCAAC TGAGCGAATT TCAGGTAGTG CTGGTGATGT
    GTTGGAAGAT GATCCCGTGG GAAGACTGAA AGTCTTTGTT TATGAGCTTC
    CAAGTAAATA CAACAAGAAG ATACTTCAGA AGGATCCGAG ATGTCTAAAC
    CACATGTTTG CTGCTGAGAT ATATATGCAA CGGTTTCTTT TATCTAGCCC
    AGTTCGAACA CTTAATCCCG AGGAAGCTGA TTGGTTCTAC GTACCTGTGT
    ACACCACTTG TGATCTCACG CCTAATGGGC TTCCTCTTCC TTTTAAATCT
    CCACGAATGA TGAGAAGTGC CATTCAGCTT ATTGCTTCCA ATTGGCCATA
    CTGGAATCGC ACAGAAGGAG CAGACCACTT CTTTGTTGTG CCTCATGACT
    TTGGAGCCTG TTTCCATTAT CAAGAAGAGA AGGCAATAGG AAGAGGAATA
    CTACCCTTGC TTCAACGAGC TACACTGGTG CAGACATTTG GACAAAGGAA
    TCATGTTTGC TTGAAAGAAG GTTCAATCAC TGTTCCTCCA TATGCTCCAC
    CACAGAAGAT GCAGTCACAC TTAATTCCCG AAAAAACTCC TCGATCCATC
    TTCGTTTATT TCAGAGGATT GTTTTATGAT GTGGGAAATG ACCCTGAGGG
    TGGTTATTAT GCGAGGGGTG CAAGAGCAGC TGTATGGGAA AACTTCAAAG
    ACAATCCGCT GTTTGACATC TCAACAGAGC ACCCAACAAC ATATTATGAG
    GACATGCAGA GAGCAATCTT CTGCCTATGC CCACTTGGAT GGGCCCCATG
    GAGTCCAAGA CTGGTGGAAG CAGTGATATT CGGTTGCATC CCTGTGATCA
    TAGCAGACGA CATCGTGTTA CCTTTTGCAG ATGCAATCCC TTGGGAAGAT
    ATTGGTGTGT TTGTGGATGA GAAAGATGTC CCTTACCTGG ACACAATACT
    CACATCGATC CCACCAGAGG TTATACTGAG AAAACAGAGG TTGTTGGCAA
    ACCCGTCGAT GAAACAAGCC ATGCTGTTCC CGCAACCGGC TCAACCAGGG
    GATGCGTTTC ATCAAGTATT GAATGGGTTG GCTCGTAAGC TGCCTCATGA
    GAGGAGTGTG TATCTGAGAC CAGGTGAGAA GCTGTTGAAC TGGACGGCAG
    GACCGGTCGC TGATCTGAAA CCTTGGTAAG GACCAGTGTT GGAATTTGAT
    TGAATGAGCT ATTGTTTGGT TGGTTTCTGT CTTCTCGTGT CTGTATTTTG
    TAGAATCATA ACTTTTTTTT GCTATGTAGA AGGGAAAAAG CTTTGTCATT
    GTAATGTAAC TAGAATCCTT TTGACATCTC ACGAGAAAGA CAAGTAAAAG
    AAAAATTATT GTTG

    Gene models with high sequence identity

    1. AT5G61840.1 [+] show detail - Exostosin family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther EXOSTOSIN-RELATED 3.4e-152
    HMMPanther EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERAS 3.4e-152
    HMMPfam Exostosin-like 3.5e-73

    See the detailed result >

    AT5G61840.1

    Model type
    Protein coding
    Short Description
    Exostosin family protein
    Computational Description
    GUT1; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT1G27440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR