F28312

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28312

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28312

Determination of introduced cDNA(s)

  • RAFL09-16-L17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-16-L17 - Resource: pda02094

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-16-L17 - full reading 
    GAAGAGCAGA GTCATTCTTA ACCATAGAGA CAGAAGAGAT AAGAATCATA 
    ACAACAACAA CACCAATCAT TACACACAGG TTGATACTAT GGAGAGAAAG 
    CCTCTTGAGG TTGAGCCATC TACTACGACG ACTAACACCG ATGTGGTCGA 
    TTCTTTCGAG GAAGAGCAGA GAAAAATCGT TTATAGAGGA TGGAAAGTCA 
    TGCCTTTTAT CATTGGTAAT GAGACATTTG AGAAGCTTGG GATCATAGGG 
    ACATTATCAA ACCTTCTTGT GTACCTAACT TCTGTATTCA ACCTTAAGAG 
    CTACACAGCT GCAACTATCA TCAATGCCTT TAGTGGTACA ATCAATTTCG 
    GGACTTTTAT TGCTGCCTTT CTTTGCGACA CTTACTTTGG TCGCTACAAG 
    ACTCTCAGTG TCGCTGTCAT CGCTTGTTTT CTGGGATCGT TTGTGATACT 
    ACTTACTGCT GCAATTCCGT CGTTGCACCC CGTTGCTTGC GGAAACAAAA 
    TCTCGTGCGA AGGGCCAAGT GTGGGACAGA TACTGTTTCT GCTCATGGGT 
    TTAGGCTTTC TTGTGGTAGG CGCTGGTGGT ATCAGACCGT GTAATTTAGC 
    GTTTGGTGCT GATCAGTTCA ACCCCAAATC CGAATCAGGA AAGAAAGGGA 
    TCAACAGTTT CTTCAACTGG TATTTCTTCA CTTTCACGTT CGCGCAGATC 
    ATCTCGCTCA CAGCAGTTGT GTATATCCAG TCAAATGTGA GTTGGACAAT 
    CGGTTTGATC ATTCCGGTGG CTCTTATGTT CTTGGCGTGT GTGATTTTCT 
    TTGCTGGCGA TAGATTGTAT GTAAAAGTGA AAGCCTCGGG TAGTCCATTG 
    GCTGGTATTG CTCGTGTTAT AGCAGCCGCG ATCAAGAAAC GAGGTTTGAA 
    GCCGGTTAAG CAGCCTTGGG TCAATCTTTA CAACCATATC CCGTCTAACT 
    ATGCAAATAC TACTCTAAAA TACACCGACC AGTTCAGATT TCTAGACAAA 
    GCAGCAATTA TGACCCCCGA GGAGAAGTTG AACTCCGATG GAACGGCTTC 
    CGATCCATGG AAACTATGCA CGTTGCAGCA AGTGGAAGAA GTGAAATGCA 
    TTGTAAGAGT GATTCCAATC TGGTTTGCAT CCACGATATA CTACCTTGCA 
    ATAACTATAC AAATGACTTA TCCGGTCTTC CAAGCGCTCC AGAGCGACCG 
    ACGATTAGGT TCTGGTGGCT TCAGGATTCC TGCGGCCACC TATGTAGTGT 
    TCTTGATGAC TGGCATGACA GTTTTCATCA TATTCTACGA CCGTGTACTT 
    GTCCCGTCGC TCAGAAGAGT GACCGGGTTA GAAACCGGTA TATCACTCTT 
    ACAAAGAATC GGAGCTGGGT TTACATTTGC GATAATGAGT TTATTAGTTT 
    CCGGGTTTAT AGAGGAAAGG AGAAGAAACT TTGCATTGAC CAAACCGACA 
    CTCGGGATGG CGCCTCGGAC AGGAGAAATC TCATCAATGT CAGCGTTGTG 
    GCTGATTCCG CAGCTTACAC TTGCAGGCAT AGCAGAAGCT TTTGCTGCCA 
    TTGGACAAAT GGAGTTTTAC TACAAGCAGT TTCCTGAAAA CATGAAGAGC 
    TTCGCGGGTT CTATCTTTTA TGTCGGTGCA GGGGTTTCGA GCTACCTCGC 
    TAGCTTCTTG ATATCAACTG TTCATCGAAC AACCGCGCAT TCACCTTCAG 
    GGAATTGGTT AGCTGAGGAT CTGAACAAAG CGAAATTGGA TTACTTCTAC 
    TTCATGCTCA CAGGACTCAT GGTTGTTAAC ATGGCTTACT TCTTGTTGAT 
    GGCTAGATGG TATAGATACA AAGGAGGTAA TGATGAAGAC ATCACTGAGA 
    TTGAGACCAA TGAAGAAGAA ACCAAGCAAC AGCAGCTACA AGACAAGAAC 
    TCTGTCTGAT CTGGAAACTT ATATATTTTT GGTATTCTAC TTCAATCTCC 
    GTAGTTTTTC TTCACCCGAA ATCAACCTTG TTGTACTTTT ATAGATTAAT 
    TGAAGAAGAA AATCACTTCA TCTTTGTAGA CATGTATTGT AAAATAAGTT 
    TTTTGTTGCC AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT3G47960.1 [+] show detail - Major facilitator superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Oligopeptide transporter 8.2e-55
    superfamily Major facilitator superfamily, general substrate transporter 3.7e-22
    HMMPanther NITRATE TRANSPORTER (NRT1) 0
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 0

    See the detailed result >

    AT3G47960.1

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G62680.1); Has 3941 Blast hits to 3750 proteins in 534 species: Archae - 0; Bacteria - 697; Metazoa - 584; Fungi - 378; Plants - 2186; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR