F28401

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28401

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F28401

Determination of introduced cDNA(s)

  • RAFL09-69-J08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-69-J08 - Resource: pda17810

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-69-J08 - full reading 
    CCCCGACGAC TACAAGCGAA CATAATGTTT AAGAAGGCGG TGGAGGCTAA 
    GTCTCACCAG CGTCTCTCCG GCGCTGACCG GAAAAAACTC CGTCGCACCG 
    TCCGAAATAG GCTTCCCCTT CTTACCGATG AACTCCTCGA CGCAATTCTT 
    CCTCCCAAGG TCGAGATTAC ACTTTCCAAG TTTCAGAATC GAGTTATTGT 
    TTATAGTATT GAAGGTGGAT GTCCCATGTT TTTCGATATC GATGGAAGAG 
    GAACTGAGAT TTTCCCCACA GTTTTTGCTC TGTGGGAGGC TCCTGAAATG 
    TTACCTTCCT TTATGTTGAA AGGAGGTGAG GTTTCACGTT ATATTATAGG 
    CGGTGCAGAT TTGATGTTCC CAGGTATTTT GATCCCTCCC CAAGGCTATC 
    CTTCTTTCTC TGCTGGAGAA ATATGGGCTG TCAAAGTTCC TGGGAATCTA 
    GCACCTATTG CGGTTGGGTG TACCACAATG AGTAGTGAAG AAGCTCGTAA 
    AGCAGGTTTA CGTGGGAAGG CTTTAAGGAT AACTCATTAT TACCGTGACT 
    TCCTATGGGA ATCAGCTGAG GGGCATTATG TTCCAAATGC GGGGTTTATG 
    GAGGATGTGG TCATGGAGGA CCCATCGTAC CTTGCTCCTG GTTCAGGTGA 
    AGATATTTTA GACACTTCTG CAAGCACCGG AAATGAAGAA GATGAATCTG 
    CTCTGGAAAC AGCTTCAACA TCGGCTGCGG ATGCTAAGAA TGATGCTGAA 
    GTACATGTCG TTGGGAGCAT GAATGAGCTA TACTTGGTAG ATGATGTATG 
    TGCTACTGAA ACTAATACCG ACAAGCAGAT TACTCTCTCC CCTGAGGAGG 
    TAGATACCCT TCTTGACCAA TGTCTTTTGC AAGCATTGCA TACAACACTA 
    AAGGAGAAAG ACCTTCCCAT CCCAGGAAGC ACTCTATGGG CAAATCATGT 
    ATTACCTTGT AGGCCTTCTG GTCTCACACT TGACATTAAG AAGTCTTCCC 
    ATAAAAAGTT GTCAAAGTGG CTGCAATCTA AAGCGTCTGG TGGAATGATA 
    TCTGTTAAGG AAGACAAGCA TAAGAAGGAG ATAGTATTGA TTTCAGTCAA 
    CCGCAGCCAC CCAGATTACA AATCCTTCAA GCCAGAGAAA AAGAAAGCGG 
    AAGTCTCCGA GTCTCCTGGA GAGCGCTCCA CGGCGCAAGC TCAGTCAGAG 
    AAAGGGCTTG AAATTATAGA GGTCTATAAA TCAAGCATAC ACAATAGTGC 
    AATATTTGCA TCAGTTGGGG AAGACAAAGG AAATCTGTAC ACAGCTTCTG 
    AAGCCACTGA CGTTGTGTTC AAATACATTG AGAAGGAAAA TCTAGTAAAG 
    CCAACAAACA AATCAATGGT GGTGTTGGAT CCGATACTAT GTGATGCATT 
    GTTCAAAGGA GCTATCAAAA AGGGATCGGC ATATCCGTCA GAGATCCACA 
    AAAAGGATGT TGGGTCGACA TTTGTAGGTA GAATGCAGCC TAATCACGTA 
    GTGATGAGAG GAGGCGGTGA ACCCGTGGTT CGTAAAGGAG CTGTAAAGCC 
    GGTTCAGATA ATGACAGAAC GAAGACAAGG TAACAAAAAA GTGACCAAGG 
    TCACAGGGAT GGAGACGTTC TTGATAGACC CAGACTCGTT TGGATCAGAA 
    CTGCAGAAGA AGTTTGCTTG CAGTACTTCA GTTGGAGAAC TTCCAGGTAA 
    GAAAGGGTAC GAGGTTCTGA TTCAAGGAGG TGTGATTGAT AACCTTGCGA 
    GATATATGGT GGAACACTAT GGAGTTCCAA AGAGATACAT CGAAGTTCTT 
    GATAAGACTA GAAAGTGAAT GGTTTTTTCT ATTTCATTTT TTTTTTTGTG 
    TGTTTTAATC TTCTAATTTT ATTTGATACG TACACTCTGT GACTCTAGAG 
    ATGTGGAACA AATGAGAATA AAATTGTTTT GCTAAAAAAA AAA

    Gene models with high sequence identity

    1. AT1G71350.1 [+] show detail - eukaryotic translation initiation factor SUI1 family protein
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Translation initiation factor SUI1 4e-17
    HMMPfam Pseudouridine synthase/archaeosine transglycosylase 1.1e-05
    HMMPfam SWIB/MDM2 domain 0.00021
    HMMPanther LIGATIN 6.7e-235
    HMMPanther LIGATIN 6.7e-235
    Gene3D no description 1.1e-06
    HMMTigr Uncharacterised domain 2 2.1e-08
    superfamily Translation initiation factor SUI1 2e-28
    superfamily SWIB/MDM2 domain 5e-18
    superfamily Pseudouridine synthase/archaeosine transglycosylase-like 4.6e-13
    ProfileScan Translation initiation factor SUI1 18.606
    ProfileScan Pseudouridine synthase/archaeosine transglycosylase 13.927

    See the detailed result >

    AT1G71350.1

    Model type
    Protein coding
    Short Description
    eukaryotic translation initiation factor SUI1 family protein
    Computational Description
    eukaryotic translation initiation factor SUI1 family protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Translation initiation factor SUI1 (InterPro:IPR001950), SWIB/MDM2 domain (InterPro:IPR003121), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (TAIR:AT1G09150.1); Has 1013 Blast hits to 993 proteins in 255 species: Archae - 62; Bacteria - 0; Metazoa - 354; Fungi - 333; Plants - 100; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR