F28439

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28439

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F28439

Determination of introduced cDNA(s)

  • RAFL05-16-D23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-D23 - Resource: pda01302

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-D23 - full reading 
    CCTAAAAGCT GAGCCGCGTC GAGAGCATTT TATATCTTCA ATCATCTTAC 
    GCAGGCTGTT GTAGCAGCAG TGTCTATCGG AGACGATGAA GTTCAACGTC 
    GCCAATCCGA CCACCGGGTG TCAAAAGAAA CTCGAGATCG ATGACGATCA 
    AAAACTCCGC GCCTTTTTCG ACAAGAGGCT CTCTCAGGAA GTTAGCGGAG 
    ATGCTCTAGG CGAGGAATTC AAGGGATACG TATTCAAGAT CATGGGAGGA 
    TGTGACAAGC AAGGTTTCCC AATGAAACAA GGAGTTCTCA CTCCAGGGCG 
    TGTCCGTCTT TTGCTTCACC GAGGTACTCC TTGTTTTAGA GGACACGGAA 
    GGAGGACTGG AGAGAGGAGA CGAAAGTCTG TCCGTGGTTG CATTGTGAGC 
    CCTGACCTGT CTGTTCTTAA CTTGGTCATT GTGAAGAAGG GTGTAAGTGA 
    TCTTCCCGGG CTTACCGACA CTGAGAAGCC AAGAATGAGA GGTCCCAAGA 
    GGGCATCAAA GATCCGCAAG TTGTTTAACC TTGGAAAAGA GGATGATGTG 
    AGGAAGTACG TTAACACTTA CCGCCGTACC TTCACAAACA AGAAGGGCAA 
    GAAGGTTAGC AAGGCTCCTA AGATCCAGAG GCTTGTGACT CCATTGACCC 
    TCCAGAGGAA GAGAGCTAGA ATTGCTGACA AGAAGAAGAG AATCGCCAAG 
    GCTAACTCTG ATGCAGCTGA TTACCAGAAG CTTCTTGCCT CCAGACTAAA 
    GGAGCAGCGT GATCGCCGTA GTGAAAGTTT GGCCAAGAAG AGGTCTAGAC 
    TCTCTTCTGC TCCTGCTAAA CCCGTTGCTG CTTAAACTGC CTCAAGATTA 
    AGAAATTTCT TTCTCTCTAG TTTGTTTCTG GTCGTATTTA AGTTGCTCCA 
    CAGACATGAG AACGCCATTT TGAACACTAT TTTTGGTTTC TGTTTTGTGT 
    CAACTTTTCA AGCCTTTTAT TATATCAAAG TTTTGAACCT CTC

    Gene models with high sequence identity

    1. AT5G10360.1 [+] show detail - Ribosomal protein S6e
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein S6e, conserved site 0
    HMMPanther 40S RIBOSOMAL PROTEIN S6 3e-151
    HMMPanther Ribosomal protein S6e 3e-151
    HMMPIR Ribosomal protein S6, eukaryotic 1e-170
    HMMPfam Ribosomal protein S6e 2e-54
    Coil coiled-coil 0

    See the detailed result >

    AT5G10360.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S6e
    Curator Summary
    RPS6A and RPS6B are fully redundant and essential during gametogenesis.
    Computational Description
    embryo defective 3010 (EMB3010); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: growth, translation, embryo development ending in seed dormancy; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S6e (InterPro:IPR001377), Ribosomal protein S6, eukaryotic (InterPro:IPR014401), Ribosomal protein S6e, conserved site (InterPro:IPR018282); BEST Arabidopsis thaliana protein match is: ribosomal protein S6 (TAIR:AT4G31700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR