F28549

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28549

Determination of introduced cDNA(s)

RAFL03-07-E18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-07-E18 - Resource: pda00223

full reading [+] show sequence

GTCTCCCACC TTTGACTCGC CCTGGGGGGA TTTTTTTTTG CTCCAGAGGC 
GAAAGAAACA AAAAAAAGCA ATGGGGTTTC TCCGTTGTCT CCAGCTGCTG 
CTGCTTCTGT TTCTATCTCT TCGTCTACAA AAGCTCTCTG CTCAATCTTC 
TTCACCCAAT GCTTCTTCTT CTTCTTCACT CGATGCTCTT CTTCAAGATT 
ACTCTTTTAG AGCCTTGCTT CGTCCTCGTA CCGGCATTCT CTACGAGGCT 
ACTACTGTTC CTTCCAATTT GACTGGGATC AAACTCGCTG CTATGAGACT 
CAGAAGCGGA AGCTTTAGAA AACGTGGAGT CACTCCTTTT AATGAGTTCT 
CAATTCCCAG CGGCGTTATC GTCAAGCCGT ATGTGACAAG GCTTGTTTTG 
GTTTATCAAA ACCTAGCTAA TTTCTCTCAC TTGTATTACC CTTTGTCTGG 
TTATGATTAT GTCGCTCCTG TCTTGGGTCT TCTCGCTTAC GATGCTAAGA 
ATCTCTCTGC GCTTAATTTG CCTCAGCTTG ATTTAAGGGT GTCTAATGAT 
CCTATCAGAA TCGATTTCTC TGATCTGGAA CGAATCCCGC AAGGGTCTAG 
TGCTAAGTGT GTTAGATTCG ATTCTAAAGG TGAAGCGAGT TTCAGCGATT 
CGATTCAGCC TGGAAACACA TGCGAGACTG AGCATCAGGG ACATTTCTCT 
GTGGTGGTGA AATCTGTGGC TTCTGCTCCG AGTCTAGCTC CTCCTGGGAT 
TGAGAGTAAG AAGAAGAAGA AGAGCTCTGA TTCCAATTCC AAGACTTGGA 
TCATTGTTGG GTCGGTGGTT GGTGGATTGA TACTGTTGGG GCTTTTACTG 
TTTCTGGTTT TGAGATGTCG AAATTACAAG AAGCAAGAGA AAATGAGGGA 
GATGGAGAGA GCTGGAGAGA CAGGGGAAGC TCTGAGGATG ACTCAGGTTG 
GTGAAACAAG AGCACCAACT GCTACTACGA CTCGTACACA ACCAATGCTT 
GAAACCGAAT ACGCAGCTTA GGATACTTTT GTGTACATCA TCATCATCAT 
CACATCTTCT TGATCATCTG TTACTGTCTT TTTCTTTTTT TCTTCTACAA 
TTATTCTTCT TTTGGTAAAG TGTTTCTTTT TCTGATTATT TTTTCTTTGT 
GGTAAGCAAG TTGATACTTC CACATTCATC TTGTTTCTCT GCTGGTGATA 
AGGAAATAAG TAATATTGTT TTCTT

Gene models with high sequence identity

AT3G08600.1 [+] show detail - Protein of unknown function (DUF1191)
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	INTEGRIN ALPHA-PS	0.0004
HMMPanther	INTEGRIN ALPHA	0.0004
HMMPfam	Protein of unknown function DUF1191	6.5e-107

See the detailed result >

AT3G08600.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF1191)
Computational Description: Protein of unknown function (DUF1191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1191 (InterPro:IPR010605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1191) (TAIR:AT4G22900.1); Has 124 Blast hits to 124 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR