F28618

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28618

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28618

Determination of introduced cDNA(s)

RAFL04-17-P12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-P12 - Resource: pda00555

full reading [+] show sequence

TGGCACACAC TTCTCTCTCT CTCTCTCTCT GCCTCCTTTC GGATTCAAAT 
CTCAGATCTA GCTCAACCAT GGCGTTGCTC GTCGAGAAGA CCTCAAGTGG 
CCGTGAATAC AAGGTCAAAG ACATGTCTCA AGCCGATTTC GGTCGTCTCG 
AACTCGAGCT CGCCGAAGTT GAGATGCCTG GACTCATGGC TTGTCGTACC 
GAATTCGGAC CTTCTCAGCC ATTCAAAGGC GCTAGAATCA CCGGATCTCT 
TCACATGACC ATCCAAACCG CCGTACTCAT CGAAACCCTA ACTGCTCTCG 
GTGCTGAAGT CAGATGGTGT TCCTGCAACA TCTTTTCCAC TCAAGACCAC 
GCCGCCGCAG CCATCGCTCG TGACTCCGCC GCTGTTTTCG CCTGGAAAGG 
TGAGACTCTT CAGGAGTACT GGTGGTGTAC CGAGCGTGCT CTAGATTGGG 
GTCCAGGTGG TGGTCCTGAT CTGATTGTTG ATGATGGTGG TGACGCTACT 
CTTTTGATTC ATGAGGGTGT TAAAGCTGAG GAGATCTTTG AGAAGACTGG 
TCAAGTTCCT GATCCTACTT CTACTGATAA CCCTGAGTTT CAGATCGTGT 
TGTCTATTAT CAAGGAAGGT CTTCAAGTTG ATCCTAAGAA GTACCACAAG 
ATGAAGGAGA GACTTGTTGG TGTCTCTGAG GAAACTACCA CTGGTGTTAA 
GAGGCTTTAC CAGATGCAGC AAAATGGAAC TCTTTTGTTC CCTGCCATTA 
ACGTTAACGA CTCTGTCACC AAGAGCAAGT TCGACAACTT GTATGGTTGC 
CGTCACTCAC TCCCTGATGG TCTCATGAGG GCCACTGATG TCATGATCGC 
TGGAAAGGTT GCTGTTATCT GTGGATATGG TGATGTTGGA AAGGGTTGTG 
CTGCTGCCAT GAAGACTGCT GGTGCTAGAG TCATTGTGAC TGAGATTGAT 
CCCATCTGTG CCCTTCAAGC TTTGATGGAA GGACTTCAGG TTCTTACCCT 
TGAGGATGTT GTCTCAGAAG CTGATATCTT TGTCACCACC ACCGGTAACA 
AAGACATCAT CATGGTCGAC CACATGAGGA AGATGAAGAA CAACGCTATT 
GTGTGCAACA TTGGTCACTT TGACAATGAG ATTGACATGC TTGGACTTGA 
GACTTACCCT GGTGTGAAGC GTATCACCAT CAAGCCACAG ACTGACAGGT 
GGGTGTTCCC AGAGACCAAG GCTGGAATCA TTGTCTTGGC TGAGGGTCGT 
CTGATGAACT TGGGTTGTGC CACTGGTCAC CCAAGTTTCG TGATGTCTTG 
CTCTTTCACC AACCAGGTGA TTGCCCAGCT CGAGCTCTGG AACGAGAAAG 
CAAGCGGAAA GTACGAGAAG AAGGTGTACG TTCTTCCCAA GCATTTGGAT 
GAGAAGGTTG CATTACTTCA CTTGGGCAAG CTTGGAGCCA GGCTTACAAA 
GCTGTCAAAG GACCAATCTG ACTACGTCAG CATTCCAATT GAGGGACCAT 
ACAAGCCTCC TCACTACAGG TACTGAGAAG AGAGAGAGAG TCGACAAAGC 
GGTTCAGGTT CGGATCTACT TGTGGTTTTG TGTTGGGTTG TGGTGGGAGA 
GTGGAACAGT TTGAGATATT GGTCTTCTGA TGAAGTTGAC CAAATATCAG 
TATTAATAAG GGTTATTGGC TTTTGAAGGT TGTGCTTGTT TTCTCCATTT 
TTCATGAAAC TTAAATTAGT TTTTGGTAT

Gene models with high sequence identity

AT4G13940.1 [+] show detail - S-adenosyl-L-homocysteine hydrolase
E-value: 0; Score: 99.94

InterPro Scan Digest

Program	Description	E-value
HMMPIR	S-adenosyl-L-homocysteine hydrolase	2.1e-252
HMMPanther	S-adenosyl-L-homocysteine hydrolase	0
PatternScan	S-adenosyl-L-homocysteine hydrolase, conserved site	0
PatternScan	S-adenosyl-L-homocysteine hydrolase, conserved site	0
HMMPfam	S-adenosyl-L-homocysteine hydrolase	2.9e-143
HMMPfam	S-adenosyl-L-homocysteine hydrolase, NAD binding	7.8e-84
Gene3D	no description	7.3e-134
superfamily	Formate/glycerate dehydrogenase catalytic dom	7.1e-114
superfamily	NAD(P)-binding domain	7.8e-45
HMMTigr	S-adenosyl-L-homocysteine hydrolase	8.6e-238

See the detailed result >

AT4G13940.1

Model type: Protein coding
Short Description: S-adenosyl-L-homocysteine hydrolase
Curator Summary: Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing.
Computational Description: MATERNAL EFFECT EMBRYO ARREST 58 (MEE58); FUNCTIONS IN: adenosylhomocysteinase activity, copper ion binding; INVOLVED IN: methylation-dependent chromatin silencing, one-carbon metabolic process, posttranscriptional gene silencing, embryo development ending in seed dormancy; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 36 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosyl-L-homocysteine hydrolase, conserved site (InterPro:IPR020082), S-adenosyl-L-homocysteine hydrolase (InterPro:IPR000043), S-adenosyl-L-homocysteine hydrolase, NAD binding (InterPro:IPR015878); BEST Arabidopsis thaliana protein match is: S-adenosyl-l-homocysteine (SAH) hydrolase 2 (TAIR:AT3G23810.1); Has 7964 Blast hits to 7958 proteins in 1477 species: Archae - 229; Bacteria - 2334; Metazoa - 639; Fungi - 145; Plants - 247; Viruses - 0; Other Eukaryotes - 4370 (source: NCBI BLink).
Link: InterPro Scan - TAIR