F28635

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28635

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28635

Determination of introduced cDNA(s)

  • RAFL07-10-N13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-10-N13 - Resource: pda17293

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-10-N13 - full reading 
    CCCATCTTAC TCTCTCTGGT TCTTCTACTA GATCCGGATC TGGAACTTTC 
    TCTACTCTCT GCTCATAAAG TTTCATTCTT TGGGGAGATC TGAGGCAACC 
    CTTTTTCTCT GGTGCATGTG ACTAGGGATT GTGCCGTGGG TTTAGGATCA 
    TGGCAATGGG GAAGTATTCT CGTGTAGACG GGAAGAAGTC ATCGGGATAT 
    GGCTTAACCA TTACCATCGT TTTAATTGTT TCTCTATGTT TGGTTGGGGC 
    GTGGATGTTC ATGTCTTCAT GGTCTGCTCC AACTGAGTCT ATTGACTTCT 
    CTGCAAACGA GAGGACAAAA GATGTAGATA CTACTAAGAG TGATTTCAAA 
    AGTGAAGAGG TTGATCGAGG TTCCAAGAGT TTTCCGGATG AAAAGAATGA 
    GGAGACGGAG GTTGTGACAG AGACCAACGA AGAGAAGACT GATCCTGAGA 
    AATCTGGTGA GGAGAACTCT GGTGAGAAAA CGGAGTCGGC TGAGGAAAGA 
    AAGGAGTTTG ATGACAAAAA TGGTGATGGG GATAGAAAAA ATGGAGACGG 
    TGAGAAAGAC ACGGAATCAG AAAGTGATGA AACCAAGCAA AAAGAGAAAA 
    CACAACTGGA AGAGAGCTCA GAAGAAAACA AATCTGAGGA TAGTAATGGA 
    ACCGAAGAGA ATGCTGGTGA ATCTGAAGAA AACACCGAGA AGAAGTCAGA 
    AGAAAACGCT GGTGAAACTG AAGAGAGCAC TGAGAAGAGT AAGGATGTTT 
    TCCCAGCTGG TGACCAGGCT GAAATCACAA AGGAGTCAAG CACTGGAAGT 
    GGGGCTTGGT CTACCCAATT GGTGGAATCC CAGAACGAGA AGAAAGCACA 
    AGTGTCCTCA ATTAAATGGA AAGTCTGCAA TGTGACAGCT GGACCAGACT 
    ACATCCCTTG CCTTGACAAT TGGCAAGCTA TCAGAAAGCT TCATTCGACA 
    AAGCATTATG AACATCGTGA GAGGCATTGT CCCGAGGAGT CTCCACGCTG 
    CCTTGTTTCT CTTCCCGAAG GGTATAAGCG ATCCATCAAG TGGCCTAAGA 
    GCAGAGAAAA GATCTGGTAC ACCAATATTC CACACACCAA GCTTGCAGAA 
    GTCAAGGGAC ATCAAAACTG GGTGAAGATG AGTGGTGAAT ACTTAACATT 
    CCCTGGTGGA GGTACTCAAT TCAAGAATGG TGCTCTTCAC TACATTGATT 
    TCCTCCAAGA GTCATATCCT GATATTGCTT GGGGAAATAG GACTCGTGTT 
    ATATTGGATG TTGGGTGTGG GGTTGCTAGC TTTGGGGGAT ATCTTTTTGA 
    CAGAGATGTA CTCGCTTTGT CATTTGCACC CAAAGACGAA CACGAGGCAC 
    AGGTGCAATT TGCTCTGGAA CGTGGTATTC CTGCAATGTC AAATGTTATG 
    GGAACCAAGA GATTACCTTT TCCAGGATCT GTTTTTGACC TTATCCATTG 
    TGCTCGTTGT AGAGTTCCTT GGCATATCGA AGGTGGTAAA CTACTTTTGG 
    AGTTGAACCG TGCATTGAGG CCGGGTGGTT TCTTTGTCTG GTCAGCGACT 
    CCAGTCTATA GGAAGACTGA GGAAGATGTT GGCATATGGA AAGCTATGTC 
    GAAGCTAACA AAGGCAATGT GCTGGGAACT GATGACGATT AAGAAAGATG 
    AACTGAATGA AGTTGGTGCT GCCATTACCA GAAGCCAATG TCGAATAAAT 
    GCTACAATGA AAGATCTCAA AATGAGCCAC CTCTCTGCAA AGACTCTGAT 
    GATCAAAATG CCGCCTGGAA TGTTCCACTT GAGGCATGTA TTCACAAAGT 
    AACAGAAGAT TCATCAAAAC GCGGAGCAGT TTGGCCTGAA AGTTGGCCGG 
    AAAGAGTGGA GACGGTTCCT CAGTGGTTAG ATTCTCAGGA AGGAGTATAT 
    GGAAAACCTG CACAAGAGGA TTTCACAGCA GACCATGAAC GCTGGAAGAC 
    TATTGTTTCA AAGTCATACC TCAACGGTAT GGGAATCGAT TGGTCTTATG 
    TTAGAAATGT GATGGACATG AGAGCAGTCT ATGGAGGTTT TGCTGCTGCA 
    TTGAAGGATC TGAAACTGTG GGTGATGAAT GTAGTTCCTA TCGACTCACC 
    TGATACCCTT CCGATTATAT ACGAACGTGG TTTGTTTGGA ATCTATCATG 
    ATTGGTGTGA ATCATTCAGC ACTTACCCTC GGACTTACGA CCTCCTTCAC 
    GCTGATCATC TTTTCTCTTC ACTGAAAAAG AGGTGCAACT TGGTGGGCGT 
    GATGGCTGAA GTAGACCGGA TTCTTAGACC ACAAGGAACT TTCATAGTAA 
    GAGATGACAT GGAAACGATA GGAGAAATTG AGAAGATGGT GAAATCGATG 
    AAATGGAATG TAAGAATGAC ACATTCCAAA GATGGAGAAG GATTGCTCTC 
    TGTTCAGAAG TCATGGTGGC GTCCTACAGA GGCCGAGACC ATTCAGTCGG 
    CAATAGCTTG AGGTCAAGGA AACGAAGAAG AGTGTGGGTT AATATAGTCG 
    ACAGTTGTTC CTTTTACGAT CCAATTGATT GTTTCTTACA TGTATTAGTC 
    GAATATTTGT ATCCCTTTTT TGCATTGAAG AAAGTTGTAT ACAAGACAAA 
    AGTGTAATCT TATCGTATAA TGAGCTTTTG CTTTGGTCCG AAAAAAAAAA

    Gene models with high sequence identity

    1. AT1G29470.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    superfamily S-adenosyl-L-methionine-dependent methyltrans 2.7e-12
    superfamily S-adenosyl-L-methionine-dependent methyltrans 6.3e-24
    Gene3D no description 3.9e-06
    HMMPfam Protein of unknown function DUF248, methyltransferase putative 1.2e-101
    HMMPfam Protein of unknown function DUF248, methyltransferase putative 9.3e-120

    See the detailed result >

    AT1G29470.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT2G34300.2); Has 67484 Blast hits to 30961 proteins in 1935 species: Archae - 320; Bacteria - 15779; Metazoa - 19664; Fungi - 6042; Plants - 3831; Viruses - 666; Other Eukaryotes - 21182 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR