F28714

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28714

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F28714

Determination of introduced cDNA(s)

  • RAFL09-34-G03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-34-G03 - Resource: pda06054

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-34-G03 - full reading 
    ACTCTCAAGT CTCTCTAAGC CACAAACCAC TGAAGAAGAA TCCATCTAAG 
    AGCTGTTAAA AATTGATGAA GCTTCGAATA TGAAGAAATT GAAAAGCTAT 
    TACATGCAAG TTCGTAACCA GCAACAATCT CTTGACCGAA AATGGATTCT 
    TCCATTAGCA ATCGGATCCA TTTGTTCTCT CTTTCTCTTG TTGCTAACGA 
    ACTTAGCTTC TTCTTCTGGT CAAACTCGTT TGATTCCATT TTCAGTTTAC 
    GGATTTAGAT CCTCCGTCTT CGTCGAATCC AAGATAAATC CAGTATCCGT 
    CTCACTCACC GTCTCCGTCT CTCCTCCTCC GCCGCCACGT CTCGCTTATC 
    TAATCTCCGG CTCCTCTGGT GACGGTCAGA TGCTGAAACG AACTCTAATG 
    GCGCTTTATC ATCCCAACAA CCAGTACGTT GTTCATCTCG ATCGGGAATC 
    TTCACCGGAG GAACGATTGG ATCTCAGTGG TTTTGTGGCG AATCATACTC 
    TGTTTCAGAG ATTTCAAAAT GTTCGGATGA TTGTTAAGGC TAATTTCGTT 
    ACGTATCGTG GTCCAACTAT GGTGGCTAAT ACACTTCACG CTGCAGCGAT 
    TTTGCTTCGT GAAGGTGGTG ATTGGGATTG GTTCATCAAT CTCAGTGCCT 
    CTGATTATCC TCTCGTAACA CAAGATGATC TGTTGCATAC GTTTTCGTAT 
    CTTCCTCGAG ATCTCAATTT CATCGATCAT ACAAGCAACA TTGGCTGGAA 
    AGAGTCTCAT AGAGCAAAGC CTATAATTAT TGATCCTGGT TTGTATATGT 
    CAAAGAAAGC TGATGTTTTC TGGGTTTCAC AGAAGAGAAG TATGCCTACA 
    GCTTTCAAAC TCTTCACAGG ATCTGCGTGG ATGATGTTAT CTAGACCTTT 
    TGTGGATTAT TTCATATGGG GATGGGATAA TCTTCCTCGA ATTGTGTTAA 
    TGTATTACGC AAACTTCCTT TCATCGCCAG AAGGTTACTT CCACACTGTG 
    ATTTGCAATG CTCGAGAGTT TACCAACACA ACGGTTAACA GTGACTTACA 
    TTTCATCTCA TGGGACAATC CTCCAAAGCA ACATCCTCAC CATCTTACAT 
    TAGATGATTT CCAGAGAATG GTGGACAGTA ACGCTCCTTT TGCTAGGAAA 
    TTCCGTAGAG ATGAGCCTGT TCTCGATAAG ATTGATTCGG AACTATTGTT 
    TCGGAGTCAC GGGATGGTCA CTCCGGGTGG TTGGTGTATT GGTACGAGGG 
    AAAACGGGAG CGATCCGTGT GCGGTGATTG GTGATACGTC GGTTATTAAA 
    CCTGGTCTTG GAGCTAAACG GATCGAGAAA CTCATAACTT ATTTGTTATC 
    TACTGAGAAT TTCAGACCAC GGCAATGCCG GTAATGGCAA ATTAGAGTTT 
    TGTCATAGAG ATGGTTACGT GGTTTTTCAC ACAAATGAAC TGTATTGATT 
    ATCCGATACT TTGATATGGT TGTATAGAGA TCTTTTTGGA CTTTCTTCAT 
    TTGAGAAAGT GCAGAAATTT CGGGAAAGAT CATTGATTAT TGGAATTTGT 
    CTTCTATTGC CGACCG

    Gene models with high sequence identity

    1. AT5G15050.1 [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther GLYCOSYLATION ENZYME-LIKE PROTEIN 6.6e-241
    HMMPanther Glycosyl transferase, family 14 6.6e-241
    HMMPfam Core-2/I-Branching enzyme 2.9e-67

    See the detailed result >

    AT5G15050.1

    Model type
    Protein coding
    Short Description
    Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
    Computational Description
    Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G39990.1); Has 926 Blast hits to 925 proteins in 118 species: Archae - 0; Bacteria - 49; Metazoa - 525; Fungi - 0; Plants - 316; Viruses - 14; Other Eukaryotes - 22 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR