F28718

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28718

Determination of introduced cDNA(s)

RAFL21-25-I08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL21-25-I08 - Resource: pda11941

full reading [+] show sequence

GGTTGTGACT CGGAGCTGCC ATGGAACGTA TCATCGGCGG CAAGTACAAG 
CTCGGACGGA AGATTGGCGG TGGTTCCTTT GGAGAGATTT TCCTAGCTAC 
GCACATCGAT ACCTTCGAGA TTGTAGCTGT TAAGATCGAG AACAGTAAAA 
CAAAACATCC TCAGCTTCTC TATGAAGCTA AGCTATATAG AACTCTTGAA 
GGAGGAAGTG GAATTCCGCG CATAAGATGG TTTGGAGTTG ATGGAACAGA 
GAATGCTTTA GTGATGGATT TGCTCGGTCC AAGTCTCGAA GATCTTTTCG 
TCTACTGTGG GAGAAAATTT TCACCAAAGA CGGTCTTGAT GTTGGCTGAT 
CAAATGCTAA CTAGAATAGA ATATGTACAT TCCAAAGGAT ATCTGCATAG 
AGATATAAAA CCAGATAACT TTCTCATGGG CCTAGGCCGC AAAGCGAATC 
AGGTTTATCT AATTGACTTT GGACTGGCCA AAAGATATCG TGATGCCAAC 
ACCAACCGCC ACATCCCTTA TAGGGAAAAC AAGAATTTAA CAGGAACTGC 
ACGATATGCA AGTTGCAATA CACATCTTGG TATTGAGCAA GGTAGACGGG 
ATGACCTAGA GTCTCTTGGA TATGTGCTTC TGTACTTCTT AAGAGGAAGC 
CTTCCATGGC AGGGTCTTAA GGCTGTTGAC AAGAAGCAAA AGTATGACAA 
AATTTGTGAG AAGAAGATAT CAACTCCTAT TGAGGTTCTA TGCAAAAGCC 
ACCCCGTGGA GTTTGCTTCA TATTTTCATT ATTGCCACAC ACTGACATTT 
GATCAACGCC CTGATTATGG ATTCTTGAAG CGGCTTTTTC GTGATTTATT 
CTCACGGGAA GGATATGAGT TTGACTATAT ATATGACTGG ACTATTATAA 
AGTATCAGCA ATCACAGAAA ACTAGAAGTC AGTCTCAGGC CGTTCCTGGG 
TCTAGTAATG CTCGTGCAAT ACCAATGGAC ACAAGCAATC ATCGAGGAGG 
AACTAAGATT TCACATGAAG CCCAAGTCTC TGACCGTGTC AGACCGGCTA 
ATGCCAGTGG TCCAAGCCCA CAGATTAATA CCGCTGTAGG GAGGAGTCTG 
GGTTTTGATC AAGTCCACAA GAATATGAAC ATGCCATCAT CCACTTCATT 
ATCTCCTGCG GGTACCTCAA AAAGAAATGT CAGACCCGAA ACCTCAAATT 
CTGGGTTTGG GAGCGGGAAT AAAACCGGCG GTTGGACTTC ACCATTCATG 
TCACCGGGGA AATGATGCAA AAAAAGTTGG AGTATATCAT TCATCTGATC 
TGCTGAGCAA GATTATGTGT GCCTTTGGGT CTAAACTGTG ATTTCTGCAG 
TGAAAAGCTC TAGACTGAGG TTGAAGATCT GAATGGAGTT TTTCCATGAA 
CAGCTTACTG TTTGACAAAA GGCATGAAGA TTATGTTTGC TTTCCTTCAA 
GATTCTCACA AATGACTGAC TTCAACCTTT GTATAAAATC TTGCAACCGG 
GCGTGTAATT TGGTTCTTGT GATTCATTCT CCCAAGTTTT CTTCTATAAA 
ACTTTGTTCG TATTTCTGTA CGTAGTTCCC TGTGTTGGGG CATAACCTGG 
GTTTGCTGTG TC

Gene models with high sequence identity

AT4G28860.1 [+] show detail - casein kinase I-like 4
E-value: 0; Score: 99.94

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	2.4e-27
Gene3D	no description	3.3e-59
ProfileScan	Protein kinase, catalytic domain	29.192
PatternScan	Protein kinase, ATP binding site	0
PatternScan	Serine/threonine-protein kinase, active site	0
superfamily	Protein kinase-like domain	4.6e-69
HMMSmart	Serine/threonine-protein kinase domain	3.3e-17
HMMSmart	Tyrosine-protein kinase, catalytic domain	0.00045
HMMPfam	Serine/threonine-protein kinase-like domain	3.2e-38
HMMPanther	CASEIN KINASE	1.9e-203
HMMPanther	CASEIN KINASE-RELATED	1.9e-203

See the detailed result >

AT4G28860.1

Model type: Protein coding
Short Description: casein kinase I-like 4
Computational Description: casein kinase I-like 4 (ckl4); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 3 (TAIR:AT4G28880.1); Has 66689 Blast hits to 66255 proteins in 2362 species: Archae - 56; Bacteria - 11242; Metazoa - 25400; Fungi - 7755; Plants - 10110; Viruses - 362; Other Eukaryotes - 11764 (source: NCBI BLink).
Link: InterPro Scan - TAIR