F28737

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28737

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28737

Determination of introduced cDNA(s)

  • RAFL05-02-P20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-02-P20 - Resource: pda17013

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-02-P20 - full reading 
    CCCGATCACG CTATTCTCAA ACAAGCAAAG AACCTTAACC AAAAAGAAAA 
    CGTCTACGGA GACATATGGA GAGGAAACAT CACTTCGTGT TAGTTCACAA 
    CGCTTATCAT GGAGCCTGGA TCTGGTACAA GCTCAAGCCC CTCCTTGAAT 
    CAGCCGGCCA CCGCGTTACT GCTGTCGAAC TCGCCGCCTC CGGGATCGAC 
    CCACGACCAA TCCAGGCCGT TGAAACCGTC GACGAATACT CCAAACCGTT 
    GATCGAAACC CTCAAATCTC TTCCAGAGAA CGAAGAGGTA ATTCTGGTTG 
    GATTCAGCTT CGGAGGCATC AACATCGCTC TCGCCGCCGA CATATTTCCG 
    GCGAAGATTA AGGTTCTTGT GTTCCTCAAC GCCTTCTTGC CCGACACAAC 
    CCACGTGCCT TCTCACGTTC TGGACAAGTA TATGGAGATG CCTGGAGGTT 
    TGGGAGATTG TGAGTTTTCA TCTCATGAAA CAAGAAATGG GACGATGAGT 
    TTATTGAAGA TGGGACCAAA ATTCATGAAG GCACGTCTTT ACCAAAATTG 
    TCCCATAGAG GATTACGAGC TGGCAAAAAT GTTGCATAGG CAAGGGTCAT 
    TTTTCACAGA GGATCTATCA AAGAAAGAAA AGTTTAGCGA GGAAGGATAT 
    GGTTCGGTGC AACGAGTTTA CGTAATGAGT AGTGAAGACA AAGCCATCCC 
    CTGCGATTTC ATTCGTTGGA TGATTGATAA TTTCAACGTC TCGAAAGTCT 
    ACGAGATCGA TGGCGGAGAT CACATGGTGA TGCTCTCCAA ACCCCAAAAA 
    CTCTTTGACT CTCTCTCTGC TATTGCCACC GATTATATGT AATAATCTTA 
    AGTCCGTTTT ACTTTTTTCT CATCGTTACT AATAAAACAA ACCCCTTTTT 
    CCGGGAAAAA AAAAA

    Gene models with high sequence identity

    1. AT5G10300.1 [+] show detail - methyl esterase 5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily alpha/beta-Hydrolases 2.9e-55
    Gene3D no description 1.5e-81
    HMMPfam Alpha/beta hydrolase fold-1 9.6e-07
    HMMPanther ALPHA/BETA HYDROLASE RELATED 4.9e-12

    See the detailed result >

    AT5G10300.1

    Model type
    Protein coding
    Short Description
    methyl esterase 5
    Curator Summary
    Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.
    Computational Description
    methyl esterase 5 (MES5); CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: methyl esterase 1 (TAIR:AT2G23620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR