F28740

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28740

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28740

Determination of introduced cDNA(s)

  • RAFL09-23-O19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-23-O19 - Resource: pda13462

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-23-O19 - full reading 
    TGGCTCCCAA ATGTTATCGT CCTCCGGAAG CTCCCTCTTA TGGCGGAGCC 
    GTACACATGT GCCTGCACCG CCGCCTCGGT CTTCGCCACC GCTTAAAGCT 
    CTCTCCTTTC CCTTCTCTTC CAGTTTATGG TTTATTCACA GAACCACAAT 
    TTCTCCTCTT TCGTGTTCAG CTGAAAGTTC CTCGGAGATT GCCCTGGCGC 
    AGAGCCAGCC TGCCCCTGAT TTCAATCCCT GGTCGGAGTT CGCTCAAAAT 
    GTGTCTGGCG AATGGGACGG TTTCGGAGCA GATTTTACAT GCGAAGGGCA 
    ACCGCTAGAA CTACCTGAAT CAGTGGTTCC AGAAGCCTTT AGAGAATGGG 
    AAGTGAAGGT GTTCGATTGG CAGACGCAGT GTCCCACTCT TGCCCAGCCC 
    AACTCACTAT CCTTTCTTTA CAAGTCCATC AAACTCCTCC CCACCGTTGG 
    ATGTGAAGCT GATGCAGCCA CCCGTTACAG CATCGACCAG AGGATCATCG 
    GGGGAGGCAA ATCCTCTGCA TTAGCCTTTT CGTATTCTGT CACTGGCTCC 
    TATGTCGCTG TGTGGCCTTT GCGGAACAAC CAGCTTGAGG TGGAGCATTG 
    TCTGATCAAT CCAAAGGACA AGGAGTCTCG TGTGAGGATT TTCCAGGTTG 
    TCAGCTTAGC AGAGACCACC AACATGTCCT TGCAGAGTGT CAAAGTTTTC 
    TGTGAGCAGT GGTACGGTCC GTTCAGAGAT GGCGATCAGC TTGGAGGCTG 
    TGCCATCCGT AGCTCCGGCT TTGCTGCTAC ACCTACCACT GCAGCTTCAG 
    TGGTTACCGG TTCTTGGAGA GTTCTACTTG CTACCACTAG CTTTCACGCC 
    TCTGATTTCG GTTGTATACA ACAAGCTACT GGCGAGAAGG TGATTGAGAT 
    TGTGAGAGAA GAAAATGATC TTTTATTGCT TCCGCAAGAG CTGTGGTGCT 
    CACTCCAACA AGGCAAAGAC CGCGAAAGAG TATTTTCAGT AGGATGGGTC 
    TTTGAGCCAG GCCATGCTAT CACATCCAGC TGCGTCTTCT CTAGCGATTC 
    TAAGCTAAAG GAGGTAACAA TGGGGAGAGA GACTGCTCTA TCAGATGTAT 
    GATCAATAAT CGTTTAAATC TCCACAGATC ATTCTTATAA TTTTCTTTGT 
    AGGATGTGTG CACATAAGTC AAATTACAAT AATCTCATAT GACTTCCTAT 
    ACTGATGTTT GATTCAGTTT ATCTGTTAAT AATACATATC AGTTCGTTTT 
    AGTAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT4G38225.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PROTEASE-RELATED 2.3e-288
    HMMPanther PEPTIDASE M20 FAMILY MEMBER 2.3e-288

    See the detailed result >

    AT4G38225.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR