F28927

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F28927

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F28927

Determination of introduced cDNA(s)

  • RAFL09-14-D18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-14-D18 - Resource: pda01748

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-14-D18 - full reading
    AACCAACCTT TCAAAACAGA ACACGAAGAC ATGGACCGAA CACAATCTCC 
    AAAGACAGCT CTGTTCGCCG TGTTGGCAAC ACTCCTTGTC TTAACCGTGA
    ACGGCCAGTC ACTTTGTAAC ACACACAGGT TCACCAATAA CCTCGCCTTC
    GCAGATTGCT CTGACCTCTC GGCCTTAGGC TCTTTCCTTC ACTGGACCTA
    CAATGAACAA AACGGTACCG TCTCAATCGC CTATCGCCAC CCTGGAACCT
    CTGCTTCTTC TTGGGTTGCT TGGGGACTTA ACCCAAGTAG TACTCAGATG
    GTTGGGACGC AAGCTCTCGT AGCCTTCACA AACACAACAA CTAACCAATT
    CCAGGCCTAT ACCTCTTCCG TGAGTTCCTA TGGTACGCGG CTTGAACGTA
    GTAGCCTAAG TTTCGGTGTG AGTGGCCTCT CCGCGACTCT GGTCAGTGGC
    GAGGTTACGA TCTTTGCAAC TCTTGAGTTG TCTCCGAATC TGATCACGGC
    CAACCAGCTT TGGCAGGTGG GACCTGTTGT CAACGGTGTT CCTGCGAGTC
    ATCAAACCTC AGGAGATAAT ATGAGATCGA GTGGTAGGAT TGATTTCCGG
    ACTGGTCAGG CATCAGCTGG TGGTGGTGGT TCCGGTGACA GGCTGAGGAA
    GAGAAACACG CATGGAGTAC TAAATGCGGT CAGCTGGGGA GTACTAATGC
    CAATGGGAGC AATGATGGCT CGGTACATGA AAGTCTTCGC CGATCCAACA
    TGGTTCTATC TCCACATTGC CTTTCAAGTG TCGGGTTACG TCATCGGGGT
    AGCCGGTTGG GCCACCGGAA TCAAGCTTGG TAACGACTCA CCAGGCACAT
    CTTACTCAAC CCATCGTAAC CTTGGAATAG CACTCTTCAC ATTTGCCACA
    CTTCAAGTAT TTGCTCTGCT TGTAAGGCCA AAGCCAGACC ACAAATATCG
    AACGTACTGG AACGTGTACC ATCACACCGT TGGATACACA ACCATCATCC
    TCTCTATTGT CAACATTTTC AAAGGATTCG ACATTTTGGA CCCGGAGGAT
    AAATGGCGAT GGGCTTACAT TGGGATCCTC ATCTTTCTTG GTGCTTGTGT
    CCTTATTCTC GAGCCACTCA CTTGGTTCAT TGTTCTTCGC CGTAAGAGCC
    GTGGAGGTAA CACAGTCGCT GCACCAACTT CGAGCAAGTA CTCTAACGGC
    GTCAATGGTA CCACCACCAC TGGACCACAT CACCAGGACG CCTAGTTTCA
    CTTTTTGTTT CTACACTTGT TCTTGTTTGT TCTACTTCTA CTCGATTTTG
    GATTCTTTTT TGATTTGATA TTTTGTAGGC TCATGTATGT ATTATGTATA
    CAATTTTATT CATTGTGTTA TAGATATATC GATTTATGGA GTCAAAT

    Gene models with high sequence identity

    1. AT5G35735.1 [+] show detail - Auxin-responsive family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart DOMON related 6.2e-34
    HMMSmart Cytochrome b561/ferric reductase transmembrane 2.3e-51
    HMMPIR Uncharacterised conserved protein UCP037471 9.1e-286
    ProfileScan DOMON related 18.55
    ProfileScan Cytochrome b561/ferric reductase transmembrane 33.483
    HMMPfam Protein of unknown function DUF568, DOMON-like 4.7e-33
    HMMPfam Cytochrom_B561 1.2e-07
    HMMPanther FAMILY NOT NAMED 0.0008

    See the detailed result >

    AT5G35735.1

    Model type
    Protein coding
    Short Description
    Auxin-responsive family protein
    Computational Description
    Auxin-responsive family protein; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT5G47530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR