F29019

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29019

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29019

Determination of introduced cDNA(s)

  • RAFL06-70-D03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-70-D03 - Resource: pda03338

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-70-D03 - full reading 
    GTCGTTTAGT CTTTCTTCTA GAACACAAAA TCGATTTTGA GCTTTAACGG 
    AAAGAGACGA CAATGGCGGG TCGGTTCTTC GATAACGTGA TGCCTGATTT 
    CGTGAAGGAG AAGGAAAGTG TATCTGGAGG AGATACGCTT AGGAATCTGC 
    TTGCTATGCC GTATTCGTCT CTCTCGCAGC AGCTCAAGCG GTCCGCTTTG 
    GATCTCAAAG AAACCGTAGT GATTGAAACT TGGGGTTTTA GTGGACAGAC 
    TGTTGAAGAC TTCACTCTTT ACTCTGGAAC TCTTGGAGCT GCGTTTTTAC 
    TCTTTAGAGC TTATCAGGTT ACTGGCAACG CCAACGATCT TTCCCTCTGC 
    TTGGAAATCG TCAAAGCTTG TGATACTGCT TCTGCTTCCT CAGGGGATGT 
    TACTTTTCTC TGTGGCCGAG CTGGTGTTTG TGGTCTTGGC GCTGTTGCAG 
    CTAAGCTTTC TGGTGAGGAA GATTTGCTCA ATTACTATTT GGGACAATTT 
    CGTCTGATAA GACTATCTAG TGATCTTCCT AACGAGCTTT TGTATGGAAG 
    AGTTGGTTAT CTATGGGCTT GTCTGTTTAT CAACAAGTAC ATCGGCAAAG 
    AAACTTTGTC TTCAGATACC ATCCGCGAAG TTGCTCAGGA GATTATCAAG 
    GAAGGAAGAT CAATGGCTAA GAAAGGAAGC TCACCGCTTA TGTTTGAATG 
    GTATGGCAAA AGGTACTGGG GTGCAGCACA TGGACTTGCT GGTATTATGC 
    ACGTATTGAT GGATGTTCAG CTGAAGCCTG ACGAGGCAGA AGATGTGAAG 
    GGAACCCTTA AGTATATGAT CAAGAATCGG TTTCCAAGTG GAAATTACCC 
    TGCTAGTGAA GAGGATAAGA AGAAAGATAT TCTTGTGCAT TGGTGTCATG 
    GAGCCCCTGG GATTGCCCTC ACACTTGGGA AGGCGGCTGA GGTTTTTGGG 
    GAGAGAGAGT TTCTGGAAGC GAGTGCAGCT GCAGCAGAGG TGGTTTGGAA 
    CCGTGGATTG CTCAAGCGCG TGGGGATCTG TCATGGAATA AGTGGGAACG 
    CATATGTTTT TCTTGCGCTT TACAGAGCTA CGGGAAGGAG TGAGTATCTA 
    TACCGTGCAA AAGCCTTTGC CAGTTTCCTG CTTGATAGAG GCCCCAAGTT 
    ACTCTCAAAA GGAGAAATGC ATGGAGGTGA TAGTCCTTAT TCCTTGTTTG 
    AAGGCGTTGC AGGCATGGCC TATCTCTTCC TTGACATGGT CGACCCATCT 
    GAAGCCAGGT TCCCAGGTTA CGAGCTTTAA ACTTCTTGAT CGATAACAAT 
    CTCCGTCCAT CAAATCCTTC TCTCTTGTTA TGGAGGATGC ACAAGGTAAG 
    AGAGGGTGTG AGTGTATGTG TGTTTAGTAC TAGCAAAATC TTCTTGTTGT 
    TTGATGGTGA ATAAGTTTGA GTTGATATAT AGCCGAACTG TCCGGAGAGC 
    CTGTAACTTT ATGAGTGTTA GAAGGAGAGT GTGAAACATG AAGTGAACAC 
    AAAGGTTCTG TCATTTCTGT ATATATTGTC TTTTGAGTTG AGTATCAAGA 
    AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT2G20770.1 [+] show detail - GCR2-like 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther LANC-LIKE 1.4e-280
    HMMPanther LANC-LIKE PROTEIN 1.4e-280
    HMMPfam Lanthionine synthetase C-like 2.1e-99
    superfamily Six-hairpin glycosidase-like 5.8e-13
    FPrintScan LanC-like protein superfamily 2.1e-49
    FPrintScan LanC-like protein superfamily 2.1e-49
    FPrintScan LanC-like protein superfamily 2.1e-49
    FPrintScan LanC-like protein superfamily 2.1e-49
    FPrintScan LanC-like protein superfamily 2.1e-49
    FPrintScan LanC-like protein superfamily 2.1e-49
    FPrintScan LanC-like protein, eukaryotic 2.1e-17
    FPrintScan LanC-like protein, eukaryotic 2.1e-17
    FPrintScan LanC-like protein, eukaryotic 2.1e-17
    FPrintScan LanC-like protein, eukaryotic 2.1e-17
    FPrintScan LanC-like protein, eukaryotic 2.1e-17

    See the detailed result >

    AT2G20770.1

    Model type
    Protein coding
    Short Description
    GCR2-like 2
    Curator Summary
    Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor.GCL2 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.
    Computational Description
    GCR2-like 2 (GCL2); FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: extrinsic to membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: LanC-like protein, eukaryotic (InterPro:IPR020464), Six-hairpin glycosidase-like (InterPro:IPR008928), Lanthionine synthetase C-like (InterPro:IPR007822); BEST Arabidopsis thaliana protein match is: G protein coupled receptor (TAIR:AT1G52920.1); Has 689 Blast hits to 684 proteins in 212 species: Archae - 0; Bacteria - 201; Metazoa - 271; Fungi - 68; Plants - 112; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR