F29049

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29049

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29049

Determination of introduced cDNA(s)

  • RAFL09-23-M12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-23-M12 - Resource: pda08054

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-23-M12 - full reading 
    AACTTTCAAG ATTCAACAAA ACCCACTTTC TATAGTTTTA TATGTTCATT 
    TTTTTCTGCT AAAGTATTTT TATATGTTCA TATTTCTCTT TTGTGCCATC 
    TTTTTAATAA TTTAATCTTC CTACAGAAGA TAATCTCCAA CAAAAGTTTT 
    TTCTTACAAG AAAGATTCCG AGAAGTCTTT TGTGTTTTCA ACAAACTCCA 
    GGGTTTTTTC AATGAACATG AGCAATAAAC GTAATCAGCA ACCTTCGTAT 
    ATTGCTGATC ATTTCAGCAG TTTGGATCAG GTGATAACTT CTCTGAGAGA 
    AGCTGGACTT GAATCTTCAA ATCTGATTCT AGGAATTGAC TTTACCAAGA 
    GCAATGAGTG GACAGGGAGA TATTCATTCA ATAGAAAAAG CCTTCATGCC 
    ATTGGTAAAA GACAGAATCC ATATGAGAAA GCAATATCGA TTATTGGTCG 
    TACTTTGTCT CCCTTTGATG AAGATGATCT TATACCTTGT TTCGGTTTTG 
    GCGATGTAAC AACGCGAGAT CAATATGTAT TCAGCTTTTA TCCCGAGAAC 
    AAAAGCTGCG ACGGATTGGA AAACGCAGTT AAAAGATATA GAGAGATTGT 
    CCCACATTTG AAGTTGTCCG GTCCTACCTC GTTTGCACCG GTTATTGATG 
    CTGCCATCAA CATAGTTGAG CAGAACAATA TGCAATACCA TGTTCTCGTC 
    ATTATCGCAG ATGGTCAGGT CACAAGAAAT CCAGATGTGC CGCTTGGTCG 
    ACTTAGTCCA CAGGAAGAAG CTACTATGAA CTCGATAATG GCAGCGAGCC 
    ATTACCCATT GTCGATAGTC TTGGTTGGAG TAGGAGATGG ACCATGGGAC 
    ACAATGAAAC AATTCGATGA CAATATTCCT CACCGTGAAT TCGATAACTT 
    CCAGTTTGTA AACTTCACGA AGATAATGTC AGAGCACAAA GATGCGGCTA 
    AGAAGGAGGC TGCTTTCGCA CTCGCAGCTC TCATGGAGAT CCCTTTTCAA 
    TACAAGGCTA CATTAAGTCT CAATAGAAAA CCAGTGCGCA GTTCCCATCA 
    GCACCACAAG CCACTCCCGC CACCACCAGA GGTTATAGAG CGTGACAATG 
    CTGTTAGATC GGTGCCAAAT CAGATGACAG AAACTGCAGA GAAAAGTGAC 
    AGACTCGCTC CTTCCACAGT GCCGGTATGC CCGATTTGCT TGACGAATCC 
    AAAGGACATG GCTTTTAGCT GCGGTCACAC GACATGCAAG GAATGCGGAG 
    TTGTTATCAC AACATGCCCA CTATGCAGAC AACCAATAAC AACAAGGATA 
    AGGCTGTACA CTTGACTCGG AAAAATTCTT AGAGATGAGA CAAATTATAT 
    GGTTAAGCAC TTGAGCTTCA TGTTTATACT TCTGTAGAAC ATTGTACAGT 
    CCAAGCAGAA GAATTGTAAA GCATAAATCT CGAGTTGTAG TTCATATGGA 
    AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT5G63970.1 [+] show detail - Copine (Calcium-dependent phospholipid-binding protein) family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther COPINE 2.6e-142
    HMMPfam Copine 2.4e-52
    superfamily RING/U-box 8.8e-10
    superfamily vWA-like 1.9e-08
    ProfileScan Zinc finger, RING-type 11.383
    HMMSmart von Willebrand factor, type A 2.7e-05

    See the detailed result >

    AT5G63970.1

    Model type
    Protein coding
    Short Description
    Copine (Calcium-dependent phospholipid-binding protein) family
    Computational Description
    Copine (Calcium-dependent phospholipid-binding protein) family; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase1 (TAIR:AT3G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR