F29119

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29119

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29119

Determination of introduced cDNA(s)

  • RAFL05-02-C24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-02-C24 - Resource: pda00817

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-02-C24 - full reading 
    AAAATGGAGA TTGTAGAAGA ACAAGCTCCT CTCACCATTT CTTCTTCTTC 
    TTCTCTCTAA AAGAAAAGAG ACTTCACCGA TTCTTTTTTA TTATTCCTTC 
    CCAGATTTTC TCGGGAAATT AATTCTTTTC CTCCTCTTTC TTCTCACTTG 
    TTGTTGTTCC TTAACACTCT CTTCCTAGAT CTACTATTAA CTGATTTCAT 
    TTCACGACTA AACCATCGAA GTCTTCGGCA AGATATGGAT TTGTTTCTGT 
    TCTATTAAAC TTGTTTCAAT CGAGAAGTAA AAAAGAATCC GATTCCACAG 
    GTGGAACTAT GTGCTGTGGA TCAGACCGAT TAAACCAGAT CGTGTCATCA 
    AGATCTTCGT TGCCAATTTC TTTCGAGGAA GATAACAATC TTGTTACCAA 
    CACAGACATG AATCACTTAA CAGTCGAAAC AGAGGATACG TTTGCGAGCT 
    TGCTTGAGCT TGCAGCTAAC AACGATGTTG AAGGTGTAAG GCTATCTATC 
    GAGAGAGACC CTTCTTGTGT AGACGAAGCT GGTCTCTGGT ACGGTCGTCA 
    AAAAGGTTCT AAAGCTATGG TCAACGATTA CAGGACTCCG TTGATGGTTG 
    CTGCTACTTA CGGAAGCATT GATGTGATCA AGCTTATTGT TTCTTTGACT 
    GATGCTGACG TGAACCGTGC TTGCGGGAAT GATCAGACCA CTGCGTTACA 
    CTGCGCTGCT TCTGGAGGAG CTGTGAATGC TATCCAAGTT GTTAAGCTGC 
    TTCTTGCAGC TGGAGCTGAT TTGAATCTGT TGGATGCTGA AGGTCAACGA 
    GCTGGTGATG TTATTGTTGT TCCTCCTAAG CTTGAAGGCG TGAAGCTGAT 
    GCTTCAGGAG CTTCTTTCTG CTGATGGATC ATCTACTGCG GAGCGGAATC 
    TACGGGTTGT GACAAATGTT CCGAATAGAA GCTCATCTCC GTGTCATTCT 
    CCTACTGGAG AGAATGGTGG ATCAGGGTCT GGTTCACCGC TCGGCTCTCC 
    TTTTAAGCTG AAATCTACTG AATTCAAGAA AGAGTATCCG GTTGATCCGT 
    CTTTGCCAGA TATCAAGAAC AGTATCTACG CGACTGATGA GTTTAGAATG 
    TATTCCTTCA AGGTCCGGCC TTGCTCTCGT GCTTATTCAC ATGATTGGAC 
    TGAGTGTCCT TTTGTTCACC CGGGTGAAAA CGCGAGGAGG AGAGACCCGA 
    GGAAGTTCCA TTACAGCTGC GTTCCTTGCC CGGATTTTAG GAAAGGAGCT 
    TGTAGGAGAG GAGATATGTG TGAGTATGCG CACGGTGTGT TTGAATGCTG 
    GCTTCATCCG GCTCAGTACA GGACCCGTCT TTGCAAAGAT GGAACAGGCT 
    GTGCTCGGCG GGTTTGTTTC TTTGCGCATA CACCCGAGGA GCTTCGACCT 
    TTGTACGCAT CAACTGGTTC AGCGGTTCCT TCGCCTAGAT CGAATGCTGA 
    TTATGCAGCT GCTTTGAGTC TCCTTCCTGG TTCTCCATCA GGAGTCTCTG 
    TCATGTCCCC GCTTTCCCCA TCAGCAGCGG GGAACGGAAT GTCTCATTCG 
    AATATGGCTT GGCCACAACC AAATGTCCCT GCGTTGCACT TACCAGGAAG 
    CAATCTACAG TCAAGCAGGC TAAGGTCTTC TCTCAATGCA AGGGATATCC 
    CGACGGATGA GTTCAATATG TTAGCGGATT ACGAGCAGCA GCAACTCCTC 
    AACGAGTATT CCAATGCTCT GAGCCGTTCT GGTCGGATGA AATCAATGCC 
    TCCTTCGAAT CTTGAAGATC TTTTCTCAGC AGAAGGCTCT TCATCTCCCC 
    GGTTCACTGA TTCCGCTTTA GCTTCCGCGG TGTTCTCGCC TACACACAAG 
    TCAGCTGTCT TCAACCAGTT CCAACAACAG CAACAGCAGC AGCAGAGCAT 
    GTTGTCTCCA ATCAACACAA GCTTTTCTTC ACCAAAGAGC GTTGACCACT 
    CATTGTTTTC AGGTGGAGGA AGAATGTCTC CTCGGAATGT TGTTGAACCA 
    ATATCACCCA TGAGTGCTCG GGTTTCCATG TTGGCTCAGT GCGTGAAGCA 
    ACAACAACAG CAACAGCAGC AGCAGCAGCA GCAACATCAG TTCCGTAGCC 
    TTAGCTCCAG AGAGCTCAGA ACAAACTCTA GCCCAATCGT TGGTTCACCG 
    GTAAACAACA ACACATGGTC ATCAAAATGG GGATCTTCAA ATGGTCAACC 
    GGATTGGGGA ATGAGCTCAG AAGCACTTGG TAAGTTGAGA TCTTCGTCAT 
    CGTTTGATGG TGATGAGCCT GATGTGTCAT GGGTCCAGTC ACTGGTGAAG 
    GAGACTCCAG CAGAAGCCAA AGAGAAAGCA GCAACATCTT CCTCAGGGGA 
    ACACGTGATG AAGCAGCCAA ATCCGGTTGA ACCGGTAATG GATCATGCTG 
    GGCTAGAAGC TTGGATTGAG CAAATGCAGC TCGATCAGCT TGTGGCTCAG 
    CAGAATTGAG AGACCTAACC AAAGAATCAC ATGTTCTTGT CTGGTCTCTC 
    TATGTGGTAG ATAAAAACCT CTTTTTTACA GGTGGTGGTG GTAGAAGGGT 
    AACAAGATTA ACAAAGAAGA GAAGAGAAGA AAGAAGATTT CTTTGTTTTT 
    GGTCAATTAA TTTTCACAAA AAACAGTTTT TTTTTTTTTT ATTTAGAGAA 
    GAGAAGGGAA CAATACAAGA AAAAGGCTTA TGGGAAGAAA GGAGATGAAA 
    CAAAACCTTC TTGGTTTTCT TTCTCCCATT TTCAATTTTT TTTTAGGGAT 
    TTCTTTCTCC CATTATCATT ATTATTATTG TTATTAATAT TATTATTTTT 
    TATAC

    Gene models with high sequence identity

    1. AT2G41900.1 [+] show detail - CCCH-type zinc finger protein with ARM repeat domain
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Ankyrin repeat 0.0062
    HMMSmart Ankyrin repeat 0.0039
    HMMSmart Zinc finger, CCCH-type 4e-06
    HMMSmart Zinc finger, CCCH-type 68
    HMMPanther UNCHARACTERIZED 6.4e-07
    ProfileScan Ankyrin repeat 12.476
    ProfileScan Zinc finger, CCCH-type 13.582
    ProfileScan Zinc finger, CCCH-type 6.963
    ProfileScan Ankyrin repeat-containing domain 16.308
    Gene3D Ankyrin repeat-containing domain 6.5e-13
    FPrintScan Ankyrin repeat, sub-type 9.6e-05
    FPrintScan Ankyrin repeat, sub-type 9.6e-05
    superfamily Ankyrin repeat-containing domain 2.1e-20
    superfamily CCCH zinc finger 0.0018
    superfamily CCCH zinc finger 0.011
    HMMPfam Ankyrin repeat 0.00012
    HMMPfam Ankyrin repeat 1.9e-06
    HMMPfam Zinc finger, CCCH-type 7.9e-05

    See the detailed result >

    AT2G41900.1

    Model type
    Protein coding
    Short Description
    CCCH-type zinc finger protein with ARM repeat domain
    Computational Description
    CCCH-type zinc finger protein with ARM repeat domain; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: CCCH-type zinc finger protein with ARM repeat domain (TAIR:AT5G12850.1); Has 5399 Blast hits to 3519 proteins in 384 species: Archae - 10; Bacteria - 312; Metazoa - 2497; Fungi - 280; Plants - 489; Viruses - 8; Other Eukaryotes - 1803 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR