F29151

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29151

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29151

Determination of introduced cDNA(s)

  • RAFL16-28-F15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-28-F15 - Resource: pda19585

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-28-F15 - full reading 
    AATAATCGCT TCTTCTTCTT CTTCTTCTTC CTCAATCTCC CAATCGTCTC 
    TTCCATCAAG CTCCCAACAA TGGCGACGGA GCTTAACCCT AAGAACTTCC 
    CTGTTCTCTC TTATGTCTTG GATCGTCTCC CTTCATTCAC CGCCAAATCC 
    TCTTCCTCTT CCGATGTCGA GCCACCACCA TCCAAATCCG ATCCTTCTTC 
    ATCATCAAAC CACTCTATCG AGATAGTGAC TCAGATGCCT CACTTGGCTC 
    ATCCTGATGT TCTTGCCTCC ATGACTAACG CAACCGCCGA CGTTTCTCAG 
    ACCCGATCTG TTCTTCGAAC CCTAGGACCA AGACCCGATC ACGAAACCGT 
    CGACAGAGCT CGTGCTAGGC TCCGTGAGAT CGACGCGTCT TTGTCGGAAT 
    CTTTCGAAGA GATCGCTCTC TCTCCTAACG ATATTGACGT GGCGGAGAAG 
    GAACAGAAGA GGAGAGAAGC TGTGGAGCAA GAGAAGATTT GGTATAAATC 
    GATCCTTAAG CTTAACGAGC TTCATGAATC TTATGAGAAG CTTTTGAAAG 
    AAGCAGAGGA GAGGCTCGTG AGGATCTATG AGTCTGCCGA GAAGAATGCT 
    GCCGCGGTGG CGGAGGAGGA AGCTGCGGAG GTTGAAGTCA ATGAAGAGGT 
    TGTGAGTATA CTGCAACAAG CTGCGGAGAA TCCATTGGAC CGAGTTGATT 
    TGTCTGGTCG GAAATTGAAG TTGCTTCCTG AAGCATTTGG AAAGATTCAA 
    GGTCTCCTTG TTCTTAATCT CTATAACAAT CAGCTTCAGG CTATTCCTGA 
    TTCGATAGCT GGTTTGCATA ACCTTCTCGA ACTCGATGTT TCCACTAATT 
    TCCTGGAGAC ATTACCAGAT TCGATCGGTT TATTGTCAAA GTTGAAGATT 
    TTGAATGTCT CTTGTAACAA ACTCACAACT TTACCAGATT CCATCTGCCA 
    TTGTGGATCG TTGGTTGTCT TGGATGCGAG CTACAACAAT CTCACCTACT 
    TACCAACAAA CATCGGATTC GAGCTAGTGA AACTAGAGAA GCTCTTGATC 
    CATCTCAACA AAATCAGATC ATTACCAACT TCCATTGGTG AAATGAGATC 
    CTTACGCTAC CTCGATGCAC ACTTCAACGA ACTCAATGGT CTCCCAAATT 
    CTTTCGGGCT GCTCACGAAC CTCGAGTACC TTAACCTGAG CAGTAACTTC 
    AGCGATCTCC AAGATCTCCC TGCTTCATTC GGAGATCTCA TAAGCCTCCA 
    AGAACTCGAC TTGAGCAACA ACCAGATCCA TTCTCTTCCA GACGCTTTTG 
    GCACGCTCGT GAACTTGACC AAACTGAACT TGGACCAAAA CCCGCTTGTT 
    GTCCCGCCTG ATGAAGTCGT GAAACAAGGT GTGGATGCGG TTAAAATGTA 
    TATGGGTAAG AGATGGGTCA GCATGTTGGA AGAGGAAGAG AAGATGGCGA 
    ATATGAAGGA TGAGATGGAT CAGACAAACA CCGATTGGCT CACCCGAACC 
    ACCTCGAAGC TGAAAACGTA TGTTACTGAG GTCTCGGAGT ATCTTGGCTC 
    GAATCCGCCT AGAGATCCTT ACCTTGACCA GCAGCTATGA AATGACTTTG 
    AGCTTCATTT TACATTTTCG TGACGATATC TCAAGTATCA GTTTCCAAAG 
    TGATCTTCAG TCTTGAGTTT TCCTGCCGCT GCTTCTCTGT TTCGGTATAT 
    AGTTTTTTTT TCTCTTTTAT TTGCTTCTAC TCTTTACTGT TGTTTATTCG 
    TATTTGTCTC ATAACATTTC ATTTATTTGT TTACCTTTTT TTTTCTTTTT 
    TCTGAAAGAA TTTTATGTTC CTTCAACAAT TTTGAGAGAT GGTAACAGAA 
    GTTCTTTTTT CAAGTTTAAA AAAGAAA

    Gene models with high sequence identity

    1. AT5G05850.1 [+] show detail - plant intracellular ras group-related LRR 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4.4e-165
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4.4e-165
    HMMSmart no description 53
    HMMSmart Leucine-rich repeat, typical subtype 16
    HMMSmart no description 4.6
    HMMSmart Leucine-rich repeat, typical subtype 14
    HMMSmart no description 0.0082
    HMMSmart Leucine-rich repeat, typical subtype 0.01
    HMMSmart no description 28
    HMMSmart Leucine-rich repeat, typical subtype 120
    HMMSmart no description 330
    HMMSmart Leucine-rich repeat, typical subtype 57
    HMMSmart no description 140
    HMMSmart Leucine-rich repeat, typical subtype 17
    HMMSmart no description 190
    HMMSmart Leucine-rich repeat, typical subtype 54
    HMMSmart no description 20
    HMMSmart Leucine-rich repeat, typical subtype 0.0015
    HMMSmart Leucine-rich repeat, typical subtype 45
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Leucine-rich repeat 0.27
    HMMPfam Leucine-rich repeat 0.013
    HMMPfam Leucine-rich repeat 0.36
    HMMPfam Leucine-rich repeat 0.14
    HMMPfam Leucine-rich repeat 0.0014
    Gene3D no description 5.9e-45
    superfamily L domain-like 1e-58

    See the detailed result >

    AT5G05850.1

    Model type
    Protein coding
    Short Description
    plant intracellular ras group-related LRR 1
    Curator Summary
    Encodes PIRL1, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. PIRL1 (AT5G05850) and PIRL9 (AT3G11330) are genetically redundant and are required for differentiation of microspores into pollen.
    Computational Description
    plant intracellular ras group-related LRR 1 (PIRL1); INVOLVED IN: microgametogenesis, pollen development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 9 (TAIR:AT3G11330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR