F29549

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29549

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29549

Determination of introduced cDNA(s)

  • RAFL05-16-J05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-J05 - Resource: pda03024

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-J05 - full reading 
    CCCGGTAAAT TTTGCCGGCG AAGATTGAAA CTTTTCCAAA CGATGCAAGC 
    AACGGCGAAT CTTCCGACGA TATGGAATCT GTCGCTTCGT GGGTCATCCT 
    CTAAAGTCCA TATAGTGAAC CCTAGGCATC GAAAGTCTCA CGCGCTTCAT 
    TGTTTGAGAT CAGAAGGGCA TGAAGAGTTT GACAATTCTC AGAAAAGTCT 
    TGGACAATCT TCTATTACAA AAGAAGCAAA ACATAAGGAC ATATGGAACC 
    TCTTTAGAGA AGCTCAAAAA AATATAATGA TCTTAAACAA ACAACGCCTA 
    GCTGCAGTTG ACGAGTTAGA ACAGCTAAAG AAAGATAAAG AGGAATTGTT 
    AGAGAGGATA AACCAATTGG AGGCAGAAAG TCAGATTGTA ATCAAGAAAG 
    ATAAGTCGTC TCTATTCTGG GAGTTGCTTC TCCGTATTGA TTCTATGGTT 
    ATCAATGGAC TAGTTAACAT TGAAGAAGCT TCATCCATGA GAAAGCTGGT 
    TAAAGAGCAT GAAGCGAACA TCTCTGTATT TCCTCTTGAT GTCCTGCAAC 
    AAGGAGATGC CGAAATTCTA GCAGAACTTA GACGGTTCAC AAATAAAGGC 
    AAAAGGAATG GTCTCCATGT GATTCATATT TGCACCGAAA TGGCTCCATT 
    AGTTTCTGTT GAACCTTTGG CCTCATATAT AACAGGATTG TCTTGTGCAC 
    TCCAAGAAGA GGGTTACATG GTTGAAGTTA TATTGCCAAA ATATTCTACA 
    CTTGATTTGG ACGAAATTGA AGGGCTTCGT GAAATCGAAG CCGATGCATA 
    TTCTTATTTT GATGGCCAGC TGCATGCAAA CCGAATATGG AACGGAGTTG 
    TCTCTGGAAT AGGAGTGACA CTTATTCAAC CAGTGTATTA CTCGTCAATG 
    TTTAGCCGTG ATAAAGTATA CGGGTATCAG GACGATTTTG ATAGATTTGC 
    ATACTTCTCT CGTGCTTCAT TGGATTACAT TGCAAAATCT GGAAAGCAGC 
    CTGATGTTTT ACACATTCAC AACTGGCAAA CTGCAATAGT TGGACCGTTG 
    TTTTGGGATG TTTTTGTTAA TCAGGGACTT GAAGGTACTA GAATACTCTT 
    GACATGCCAA GACTTTGACA AGGGTCTTGT ACCTCCTGAA AAATTGGAGC 
    TATGTGGGCT CGATCCAGCT GAACTTCACC GTCTTGATCG CTTACAAGAT 
    AACACAAATC CACATTTTGT TAATATTTTG AAGGGCGGTG TTGTCTACTC 
    CAACAAAGTT GTAATAATGT CATCCTCACA TAGCTCAATC CCTGGTCTCG 
    AACCAACTTT AGCTATCCAC AAGGACAAGT TGTTTTTTGC TCCCTTTGGA 
    ATGGACAACT CAATGGAGAA AGACTTGTGT TGTGACCTTC ACGTCTCTGC 
    ATATACTTCC ATTAAGAACC TATGAAAATA CACAATGATG AACAAGATGA 
    ATGATTATTT ATCATATTTT CACATTAAAA AAAAAAATTG TGAC

    Gene models with high sequence identity

    1. AT5G65685.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam Starch synthase, catalytic domain 8.7e-40
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 6.6e-20

    See the detailed result >

    AT5G65685.1

    Model type
    Protein coding
    Short Description
    UDP-Glycosyltransferase superfamily protein
    Computational Description
    UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: starch synthase activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Starch synthase, catalytic domain (InterPro:IPR013534); BEST Arabidopsis thaliana protein match is: starch synthase 4 (TAIR:AT4G18240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR