F29708

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29708

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29708

Determination of introduced cDNA(s)

  • RAFL09-50-K07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-50-K07 - Resource: pda06462

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-50-K07 - full reading 
    ATTCCTTTCG TTTATCGTTT TCTTCTTCCA ATTTTGGATC TCTCTTCCTT 
    TTGATCTGAT TCGTTACTTG CTCTATGTTG CTTCAATTTT GAATTCTTTT 
    GATTTTTGAT TGTGTGGGGG AGATGGGGCA ATGTTACGGG AAGGTTAATC 
    AGAGTAAGCA AAATGGTGAA GAAGAAGCTA ACACGGCTAC TTATGTTGTT 
    TCCGGCGACG GGAATCAGAT TCAGCCTCTA ACTCCGGTTA ATTACGGTCG 
    AGCTAAGAAC ACTCCAGCTA GGTCATCGAA TCCGAGTCCT TGGCCTAGTC 
    CTTTCCCTCA CGGATCAGCG AGCCCTCTTC CTTCTGGTGT TTCTCCTTCT 
    CCGGCCAGAA CTTCCACTCC GAGGAGGTTT TTCCGACGGC CTTTCCCGCC 
    GCCTTCTCCA GCCAAACACA TTAAGGCTTC TTTGATCAAA CGTCTTGGAG 
    TGAAGCCTAA GGAAGGTCCG ATCCCTGAGG AGAGAGGAAC TGAGCCGGAG 
    CAGTCGCTTG ATAAGAGCTT TGGTTATGGC AAGAATTTTG GTGCTAAGTA 
    CGAATTGGGG AAAGAAGTGG GTCGAGGGCA TTTTGGTCAT ACTTGTTCTG 
    GCCGTGGTAA GAAGGGAGAT ATTAAGGATC ATCCTATTGC TGTCAAGATC 
    ATCTCCAAGG CTAAGATGAC AACAGCAATT GCAATTGAAG ATGTTCGCAG 
    GGAGGTGAAG TTACTGAAAT CATTATCTGG ACACAAATAT TTAATCAAAT 
    ATTATGATGC ATGTGAGGAC GCCAATAACG TATACATAGT CATGGAGTTG 
    TGTGATGGTG GAGAACTTTT GGACAGAATT TTAGCAAGGG GTGGTAAATA 
    CCCGGAGGAT GATGCAAAGG CGATTGTCGT ACAAATTCTA ACTGTTGTTT 
    CATTTTGTCA TCTCCAAGGA GTTGTGCACC GTGACTTAAA GCCAGAGAAT 
    TTTCTATTTA CATCAAGCCG CGAAGACTCA GACTTGAAAC TTATTGATTT 
    TGGTCTCTCA GACTTTATTA GACCTGATGA AAGACTGAAT GATATAGTTG 
    GAAGTGCCTA CTATGTCGCG CCTGAAGTTT TACACAGGTC ATATAGCCTT 
    GAGGCTGATA TATGGAGTAT TGGAGTTATT ACATATATAC TCTTATGTGG 
    AAGCCGACCT TTTTGGGCAC GGACAGAATC TGGAATCTTT CGCACTGTAC 
    TAAGAACTGA ACCAAACTAT GATGACGTAC CTTGGCCTTC TTGTTCATCA 
    GAAGGTAAAG ATTTTGTGAA ACGACTTCTC AACAAAGACT ATAGGAAGCG 
    AATGTCTGCA GTTCAAGCTT TGACTCATCC GTGGTTACGG GATGATAGTC 
    GTGTGATTCC TTTAGACATT TTGATCTATA AGTTGGTCAA AGCCTACTTG 
    CACGCGACAC CTCTTAGACG AGCTGCTTTA AAGGCGCTAG CAAAAGCATT 
    GACCGAGAAC GAGCTAGTCT ATCTTAGAGC ACAGTTCATG CTGTTGGGAC 
    CAAACAAAGA TGGTAGCGTC TCTCTCGAAA ACTTCAAGAC GGCGCTTATG 
    CAAAACGCAA CAGACGCAAT GAGAGAATCA AGAGTTCCTG AAATACTTCA 
    CACTATGGAA TCTCTAGCGT ATAGGAAGAT GTATTTCGAA GAGTTCTGTG 
    CAGCAGCAAT TAGCATCCAT CAACTAGAAG CTGTTGACGC GTGGGAAGAG 
    ATAGCAACGG CAGGTTTCCA GCATTTTGAA ACCGAGGGAA ACCGAGTGAT 
    CACAATCGAA GAACTAGCAA GGGAACTGAA TGTGGGTGCG TCTGCGTATG 
    GACACTTGAG AGATTGGGTA AGAAGCAGTG ACGGGAAGCT GAGTTACTTA 
    GGGTTCACTA AGTTCTTGCA CGGAGTTACT CTTCGTGCTG CTCACGCAAG 
    ACCTCGCTAG TCCTTCTCTA ATTTTAGGTC TTTTTCTTAA TATTTTTTTT 
    CTTCATCAGA ACAGAGCAAA TAGACTTCTG AGAGAGGTGA GGGGTATTTT 
    CGTCCGTTTG TTTTGTTCTT TATCGTATTA TAGAGTTTCA ATTTTATGGT 
    ACAGAAAAGA CCAAAATGAA AAAAAGATAT AAACATGTGC ATAAGGTAGA 
    TGGGTTACAG TC

    Gene models with high sequence identity

    1. AT2G46700.1 [+] show detail - CDPK-related kinase 3
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 1e-83
    superfamily EF-hand 3.4e-21
    ProfileScan Protein kinase, catalytic domain 48.838
    ProfileScan EF-HAND 2 8.572
    ProfileScan EF-HAND 2 5.754
    HMMSmart Serine/threonine-protein kinase domain 7.6e-98
    HMMSmart Tyrosine-protein kinase, catalytic domain 7.3e-12
    HMMPanther Calcium-dependent protein kinase 2.2e-196
    HMMPanther Calcium/calmodulin-dependent protein kinase-like 2.2e-196
    HMMPfam Serine/threonine-protein kinase-like domain 1.7e-65
    Gene3D no description 6.2e-18
    Gene3D no description 4.2e-57

    See the detailed result >

    AT2G46700.1

    Model type
    Protein coding
    Short Description
    CDPK-related kinase 3
    Computational Description
    CDPK-related kinase 3 (CRK3); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Calcium-dependent protein kinase (CDPK) family protein (TAIR:AT5G24430.1); Has 116104 Blast hits to 114484 proteins in 3071 species: Archae - 147; Bacteria - 14534; Metazoa - 42529; Fungi - 12635; Plants - 24936; Viruses - 621; Other Eukaryotes - 20702 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR