F29722 - RIKEN Arabidopsis Genome Encyclopedia

F29722

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29722

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29722

Determination of introduced cDNA(s)

  • RAFL04-14-B02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-14-B02 - Resource: pda00320

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-14-B02 - full reading
    GTCTCTTTCG TTGATTTCTG GTTCGATTCA TATCTGCGCT GAGCTTCGTC 
    TCCGTCAATC TCCGTCGTGT TTAACAATCT CTTCTTCGCG GCCAAAATTT
    CTCTCTTCCC GTAGTAAGCA GTTCTCTCTC GACCATTTTC CTCAGATCTC
    ACGTCCGATC AAAGTCATCG CGAGAAGCGC CATGGAGACG ACGGCGGAGA
    CAATTACCGG CGGTGTTCCC AACAACACGA TGAAGTTATT GTTCGTTGAG
    ATGGGTGTCG GTTACGATCA GCACGGGCAA GATGTGACAT CTGCGGCGAT
    GAAGGCTTGT AAGAATGCAA TTTCTTCGAA TTCGATTCCT GCTTTTAGGA
    GGGGTTCGAT TCCTGGAGTT TCATTTGGAG AAATGAAGTT GCAGATTAAG
    CTTGGAGTGC CTCATTCTCT TCACCAGCAG CTGGATTTGG ACAAGGTTAA
    GTCTATCTTC CCATATGGGA AGATTGTGAA TGTAGAGGTG GTGGATGGAG
    GACTGATTTG CTCAAGCGGT GTTCTAGTCG AAGAAATGGG TGATACAAAT
    GAAGATTGCT ACATAGTGAA TGTCGCAGTC TATGTCGGTT ACTAGTCTAT
    CGTTCTTGTA TGGTCGACTC GACGCCGGGT TTAACAATGT CACCCTCGTC
    GATAGAAGAG AAAAACAAAA ACAAATGCAG TCACTTTTAG TTGTATATTT
    TGATTTCAGA ACCATTTTGG TTTGTAGGCG TGCAGCGTTT GGTGCGGTCT
    AGAAATAATC ACGTTTGCCC CAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT1G29040.4 [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IP...
      E-value: 0; Score: 99.87

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Conserved hypothetical protein CHP02058 4.2e-38
    HMMTigr Conserved hypothetical protein CHP02058 2.50000909916183e-84

    See the detailed result >

    AT1G29040.4

    Model type
    Protein coding
    Computational Description
    unknown protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 344 Blast hits to 344 proteins in 122 species: Archae - 2; Bacteria - 227; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR