F29810

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29810

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29810

Determination of introduced cDNA(s)

  • RAFL08-19-M18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-19-M18 - Resource: pda05036

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-19-M18 - full reading 
    AATATCTTCC TTTGTCAATC TCTTGAGAGT TTTTGCTTCC TCGTCTTCTT 
    CGATTCATCA AACAGCGTGT GTTTTTTGTT TAGAGTTGGA AGAGACGAAT 
    CGAATTTTGA AGCTTTCTTT TATGTCTGAC AAGATATCTC CGTTTTGTTG 
    TCAATCTGGT TGCTTGGAAA ACACAGTCCT ACATCCAGAA TTAAGGACTA 
    CTACTAGTTC CTCCATCACT TTAGGGTCTC GCATCTTCAA ACCGGAGATC 
    CCTCCTCTTT CTCTCCACTT TTTTAGCTAA GAAGAATGGC GCTGCAGAAC 
    ATTGGTGCTT CCAACCGTAA CGATGCCTTC TACAGGTACA AGATGCCTAA 
    GATGGTTACC AAAACCGAAG GCAAAGGTAA TGGCATTAAG ACCAACATTA 
    TCAACAATGT TGAGATTGCC AAAGCCTTGG CTAGACCGCC TTCTTATACG 
    ACCAAGTACT TTGGTTGTGA GCTTGGAGCG CAGTCTAAGT TTGATGAGAA 
    GACTGGGACG TCGCTTGTGA ATGGAGCTCA CAACACGTCT AAGCTTGCTG 
    GGCTTTTGGA GAATTTTATT AAGAAGTTTG TTCAGTGTTA TGGATGTGGT 
    AACCCGGAGA CTGAGATTAT TATTACGAAG ACGCAGATGG TGAATCTCAA 
    GTGTGCTGCT TGTGGGTTTA TCTCTGAGGT CGACATGAGG GATAAGTTGA 
    CTAATTTCAT TCTCAAGAAC CCACCTGAGC AGAAGAAGGT GTCAAAGGAT 
    AAGAAAGCAA TGAGGAAAGC TGAGAAGGAG AGGCTTAAAG AAGGCGAGCT 
    AGCTGATGAG GAGCAGAGAA AGCTGAAAGC TAAGAAGAAA GCATTGTCTA 
    ACGGCAAGGA TTCTAAGACG TCTAAGAACC ATTCTTCTGA TGAGGATATA 
    AGCCCGAAGC ATGATGAGAA TGCTCTAGAG GTGGATGAGG ATGAAGATGA 
    TGATGATGGT GTCGAGTGGC AAACTGATAC TTCCCGAGAA GCTGCTGAGA 
    AAAGAATGAT GGAACAGTTG AGTGCTAAAA CTGCCGAAAT GGTGATGCTC 
    TCTGCAATGG AAGTAGAAGA GAAAAAGGCG CCCAAAAGCA AATCTAACGG 
    GAACGTTGTG AAAACTGAGA ATCCTCCTCC GCAAGAGAAG AATCTCGTGC 
    AGGATATGAA AGAGTATCTG AAGAAAGGGT CACCAATAAG CGCGCTCAAA 
    AGTTTCATCT CGTCTCTCTC TGAACCTCCT CAAGACATCA TGGACGCACT 
    CTTCAATGCT CTCTTTGATG GTGTGGGAAA GGGATTCGCC AAAGAAGTGA 
    CTAAGAAGAA GAATTACTTA GCGGCTGCTG CAACAATGCA AGAGGATGGA 
    TCACAGATGC ATCTGCTCAA TTCGATTGGG ACATTCTGTG GAAAGAATGG 
    AAACGAAGAA GCTTTGAAAG AGGTGGCTCT GGTTCTTAAA GCATTGTACG 
    ACCAAGACAT CATTGAGGAA GAGGTAGTGT TGGATTGGTA CGAAAAGGGT 
    CTCACCGGAG CTGACAAAAG CTCGCCGGTT TGGAAGAATG TTAAGCCTTT 
    TGTGGAGTGG CTTCAGAGCG CTGAGTCTGA GTCCGAAGAG GAGGATTGAG 
    TCACTTTTTT CTTCCCTCCT AACTTTTCTT TGCGGCATTT CTTATAATAC 
    TTCGTCAGTT TTCAGAATTC TTAAATCTTT TTGCTGTGTT CTTATAAAGA 
    AACATCATCT ATTAAAGTTG TCTTCGTTTG GATTTGGTTT TGACGACTTT 
    GGGAAATATT TATGTTTAAG AAGGTTTCAT TGGT

    Gene models with high sequence identity

    1. AT1G77840.1 [+] show detail - Translation initiation factor IF2/IF5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Armadillo-type fold 2.3e-31
    superfamily Translation initiation factor IF2/IF5, N-terminal 8e-24
    superfamily Translation initiation factor IF2/IF5, zinc-binding 3e-07
    ProfileScan eIF4-gamma/eIF5/eIF2-epsilon 27.535
    HMMSmart Translation initiation factor IF2/IF5 3.2e-61
    HMMSmart eIF4-gamma/eIF5/eIF2-epsilon 9e-35
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 5 3.8e-219
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 3.8e-219
    Gene3D eIF4-gamma/eIF5/eIF2-epsilon 5.8e-25
    HMMPfam Translation initiation factor IF2/IF5 8.9e-40
    HMMPfam eIF4-gamma/eIF5/eIF2-epsilon 3.6e-23

    See the detailed result >

    AT1G77840.1

    Model type
    Protein coding
    Short Description
    Translation initiation factor IF2/IF5
    Computational Description
    Translation initiation factor IF2/IF5; FUNCTIONS IN: binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of translational initiation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Translation initiation factor IF2/IF5 (InterPro:IPR002735), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF2/IF5 (TAIR:AT1G36730.1); Has 4597 Blast hits to 3869 proteins in 471 species: Archae - 198; Bacteria - 234; Metazoa - 1589; Fungi - 711; Plants - 391; Viruses - 12; Other Eukaryotes - 1462 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR