F29940

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F29940

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F29940

Determination of introduced cDNA(s)

  • RAFL07-18-F03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-18-F03 - Resource: pda04433

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-18-F03 - full reading 
    AACAATCACA TTCTTCTCCC ATAAGAAAAA AAAAATAATC AAATCCTCCT 
    CCTCTGCTTC ACCACCAAAA AGCATATTCT TCTCTCGTCT TCTCCGGTTA 
    ATCAAAATCT CTCCGTGTGA ATCGTTTGTG AATGGTGGAA ACTAATCCGA 
    TCGGTGGTAA GTTTACGCTC TCCCTTTCCA TCAAAAGGGC GAGCTTTTCT 
    CTTCCTCTCT CGACATCCTC TGTTTTCGCT TTCGGATCTT GCAAAGAAGG 
    CTGGTACTTT CGCTGCCTTG GCCTCGACCC GTGAACGATT CGCCCCTAAA 
    ATTCACAACC CGGAACCCTA ATTTCCTAAA AAGTGGTTCT TTTTTTATTG 
    ATTCTGTTAC TTGTGAGATT TGCTCTGTTT TTTGTTCTCT CGATTTCGAA 
    GATGTTGCTC TACAACAAGC AGAAGAAGAA CCAAAACGCT AAAGGGAATA 
    GGATTCTCAT TAGCGTTACG GTTTTGGGTA GTGCCGGTCC GATCCGGTTT 
    GTTGCTTATG AGGATGATCT TGTTGCCTCT GTTATCGATA CTGCTCTTAA 
    AGGTTACGCT CGTGAAGGTC GTCTTCCTCT TCTTGGATCT GATTTCAATG 
    ATTTTCTTCT CTATTGTCCT ATGGTTGGAC CTGAAGCTTT AAGCACATGG 
    GATGCAATTG GATCTCTTGG AGCGAGGAAC TTTATGCTCT GTAGGAAACC 
    AGAGGAGAAG AAGGTTGAGG AAAGTAATGG AAGATCTGAC TCTACCATTA 
    ATGGTGCAAG AAAAGGTGGA AGCTTGAAGG CTTGGATCAA CAAATCCTTC 
    AATCTCAAAG TCTCAAGCCA TTAAGATTAA TTTTCTTCTC TTTTTTATGA 
    AATAATAAGA CCAATCTTTG TTTTATCATC ATTATGTTCT TTGTTTTTGG 
    TTTTGATTCC AAAGTTTGTT ATTTTCATCT TTCATTCATG AATAAAAGTG 
    TCAAATTCTT CC

    Gene models with high sequence identity

    1. AT1G70782.1 [+] show detail - conserved peptide upstream open reading frame 28
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G70782.1

    Model type
    Protein coding
    Short Description
    conserved peptide upstream open reading frame 28
    Curator Summary
    Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF28 represents a conserved upstream opening reading frame relative to major ORF AT1G70780.1
    Computational Description
    conserved peptide upstream open reading frame 28 (CPuORF28); BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 29 (TAIR:AT1G23149.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR