F30009

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30009

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30009

Determination of introduced cDNA(s)

  • RAFL05-10-A05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-10-A05 - Resource: pda00897

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-10-A05 - full reading 
    ACAAACGGCA GAGCATGTCG AATCGAGAAC ATCTCCGAGA CTTGGCTTAT 
    CTCTCCGACG ATCTTCGTAT AAAACTTAGT CCGGCGGGAA ATCGACTTTC 
    AAATTCGCAG GATTCTGTCG ATATTCTTGT ATAGTTGCGA GTCTACAAGA 
    TTCTTCTTCA CCATCTCTGT TAATTTTTCC CTAATTCTTT CATCTGAGTG 
    AAGGAAATGG ATCCTGAAGC TGTGAAGGAG TTTATACGAA GGGAAGTTCC 
    AGATTGGGAC GATGAGGTGG TGGCGATGGC TAGATTCAAG GCGTTTAGTG 
    GTCAGAGGTC CGATTGGGGA CTTAAATTTC AGTTTTGGCG TGATTTGATC 
    ATCAAGGTTT CGCGTCAGTT TGGGTTGTTC ATCATTGATC CTGTCCAGGT 
    GAAGAAGGCG TGGTTTGATC GAGGAGGAAT GACGCCTTTA TGCATTGATG 
    ATGTTGTGTT ATTGATGCAT AGTGAAGGTG ATGTTGTGCG GATTAGTGAT 
    CTCGATGATC CCGGTAGTGG TCGTATTGCT CGTTTATTGA GGACAGTGAA 
    GAACTTAATG GTTCAACAGC CAGTGAAGCA GGAAGAGATT CTGGAAAATA 
    CACTTGTTCT TGTTCCACTC TTGAAGGAGA AGGCGGCTGA CGTGGTGAAG 
    ATATTATCTG AGGGACACTG GACTTCTACT TGTGTTGTCA CGCTGAAGAA 
    GTTTCGGAAT TTGTGCAACG GTTCGAATGA GGCTTCAGCT GTTTTGAGTC 
    ACTTGTCAGG GTGTGGAAAA GCGCATAAAA TCTCTATCAA TCGGGGAGAA 
    CTGATTGAGG GTGTTAAGGT GTCCTTTTCA CAAACAGCAC TTCCCGGTAT 
    CTCAACTTTA GACTGTGATA TTCTGCACTT GCTAAGGACT ACAGAAAAGC 
    TCCAAGATCA ACTTGAAGTG ATGGACCAAC GTTGTGAAAA GTCAAAGAAA 
    TCAGCGCTGG CATCTCTAAA GTCTGGACAC AGGAAAGTTG CTCTAAGGCA 
    TGCAAGGGAA TTGAAGGTGG TGACTGAGAG CAGAGAAAAA TGCACGTCAC 
    TTCTGAACAG AGTAGAAGAA GTGTTGAACA CTATAGCGGA TTCCGAATCT 
    ACGAAAATGG TCTCAGAAGC AATTAAAACT GGAGCTAGGG TTATGAAGGA 
    CATCAAGATC AGTGCAGATG ATGTTCATGA CTATCTAGAA GAACTTGAGG 
    AAACTATTGA ATCACAGAAG CAAGTCGAAA AAGCTCTCGA ATCAGCTCCA 
    TATCCAGATA TTGATGATGA AGATATCGAA GAAGAATTAC TGGAACTAGA 
    GATGGACCTT GAAAGTGAAA GTTCTCAGGT CCTACCAGCG ACTTCAGATA 
    CTGCAGATTC ACTGACTGAG ATGTTCTCAG AGCTTAAACT TGGCAAGACG 
    AAACAAACAT TGGATGAGCA AGCTACTGAG CCAGCTCAGA TGAAAGATAG 
    CGGAAAAAAG ATTCTTGAAG CAGCATAGCT GAACAATGCA TCTTCATTGC 
    GGTGCGATCT CTTCTCTTCC TGTTGTTCTT AGTGAAGAAA TACACTCAGT 
    ATCATATAAA TAGAATAGAA CCGGGTAAAG TGAGTTGAGT ATTTGTATGC 
    TATGCCTCTT GTTTGGATTC TAGAAACAAT AGCTTCACTC CATTGTATAA 
    AGTCAGCAGC TTGTTTCATA AACAGAGAGG AACGTCGAGT TATGATTTTT 
    ATCACTCCGA TAGTGTTCGA TAATTTATTA AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT3G62080.1 [+] show detail - SNF7 family protein
      E-value: 0; Score: 99.88

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Snf7 1.1e-15
    HMMPanther SNF7 - RELATED 7.6e-71
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT3G62080.1

    Model type
    Protein coding
    Short Description
    SNF7 family protein
    Computational Description
    SNF7 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR