F30112

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30112

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30112

Determination of introduced cDNA(s)

  • RAFL06-87-C06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-87-C06 - Resource: pda03909

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-87-C06 - full reading 
    AAAAACTTCC CAATTCCATT CCTCTTCCTC TTCCTTCTCC TTCTTCTTCT 
    TCTTCACCAT TTATTTCTCA TCATCATACT TATAAAAAGT AAATCAGAAT 
    CCCGAAGCAA ACTTTCAATC TTCCATCATC ATCATCATGT CCGATACACA 
    TACATACATA CATATCTTTC GTGTGATTTA TACTTATTAA AGAGAGATTC 
    TCTCATTAAG AAGAAGCTTC CTTCTTTCTT TTCTTTTTCT TCTCTCTGTT 
    CATGGCGGTT CAAGCTCATC ACCATCCTTC TACTCTCTTC TTCCTCAACA 
    ACGGACAAGA AGGGAATGAT CAGCCGCATA AATCTCAGTT TCATTCAATC 
    AACGCCGGGG TTGATACAAG AAAGCGAGCG AGAGAAGTTT CTTCGGTGAT 
    TGATTTAGAT ATCACGGCGG CTCCGATGAA CCCTCCGCCG CAAACTCCAC 
    CGCAAGTTAT AGGACGTCGA CAAAATCCGA ATGTTGTATC AACCGGTCTA 
    CGTTTGTCTC GTGAACAGTC GCAGAATCAA GAACAACGGT TTTTGTCTTT 
    TCCGATAACC GGAGATGTCG CCGGAGAAAT CAAAAGCCAA ACGGACGAAT 
    TAAATAGATT TCTTCAAATC CAGGGAGAGC AGCTTAAGCG CATGTTAGCT 
    GAAAACAGTG AGAGGAACTA TCGTGAGCTT CTGAGAACAA CGGAAGAATC 
    AGTAAGGCGG AGATTAAGAG AGAAAGAAGC GGAGATCGAG AAAGCCACAC 
    GTCGTCATGT CGAGCTAGAA GCACGTGCGA CTCAGATCGA AACAGAGGCA 
    CGTGCTTGGC AAATGAGAGC AGCTGCTAGA GAAGCCGAAG CGACGTCGTT 
    ACAAGCTCAA TTACACCAAG CCGTAGTAGT AGCTCACGGT GGCGGAGTTA 
    TTACGACGGT GGAGCCACAA TCGGGAAGCG TAGACGGTGT GGATGAAGCT 
    GAAGACGCCG AATCGGCTTA TGTGGATCCC GACCGGGTCG AAATGATTGG 
    ACCGGGATGT AGGATTTGCC GGCGGCGATC GGCGACGGTG TTGGCTTTGC 
    CGTGTCGTCA TTTGGTTATG TGTACAGAAT GCGACGGCTC CGTGAGAATT 
    TGTCCGCTTT GCCTTAGCAC GAAGAATTCA AGCGTGGAGG TTTTCTATTC 
    TTGATGGGCC ATTCTATAAT GGGCTTATCA GGCCCAATCA AATGGAATTT 
    AATAATAATA ATAAAAATAT AAATTAAATT TATCATTTAT ATAAACTATA 
    TATGTAGTAT ACTGTTGAGC TCATTATTGA ATAGCTTGAG AGGTTTGATG 
    TACATAGCCA CCACATGCAG TGAGCTTCTT CTTTTTTTGG TCTTTAGGAA 
    TTCTTTTGAT TTCGTAATAA ATCAACCTTG ATTGTTTAAT TTTTAATTAC 
    TTTACATATA TAGCATTTGA TACGATATGA TTTATTTATG ATGTTTTAGT 
    AGAGGATGAG ACATGATTTA GTATTATTTT CAAATGTTTT GTATTGTTAT 
    AATATTTGTA TTCTAATTAA GAATATTCTA GGGTTTTTGT GTTTTTAAAT 
    ATCTATTTGT ATAAAGCATG TTCATTATTT CTTGTTTTTG GTTGAGCTCA 
    ATGTATTTTT ATGGAATTTT AAACTAAGCG AACAATTATC TTAAAAAAAA 
    AAAAAAAA

    Gene models with high sequence identity

    1. AT5G47050.1 [+] show detail - SBP (S-ribonuclease binding protein) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther INHIBITOR OF APOPTOSIS PROTEIN 1 AND 2, IAP1, 1.5e-08
    HMMPanther INHIBITOR OF APOPTOSIS 1.5e-08
    ProfileScan Zinc finger, RING-type 9.435
    Coil coiled-coil 0
    HMMPIR S-ribonuclease binding protein, SBP1, pollen 4e-149

    See the detailed result >

    AT5G47050.1

    Model type
    Protein coding
    Short Description
    SBP (S-ribonuclease binding protein) family protein
    Computational Description
    SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT4G17680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR