F30139

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30139

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30139

Determination of introduced cDNA(s)

  • RAFL06-07-G05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-G05 - Resource: pda02834

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-07-G05 - full reading 
    GCCGGAGAAC TGAGGGGAGA AAAAAACCCG GCGAAAAAGG GAAATTCGAA 
    TTCGTCTTCT GTTGATCATT GCTTCACTTC TGCTTCCAGA GCTTTTACTC 
    AGAAGAAGCT CGCTGATCTC AAATCTCTCT TTTTTTCCCT CGCTTCCAAG 
    TCTCAGAGCA ATGACCAATA CGTCTCGTAC CCTGTTTTCC AGGAGTATTT 
    TGGTCTGAGT GGTTCTTTAG GAGAAAGGAT CTTTGATATG GTTACTCAAC 
    ACAGGAAAGA TGATAAAATG ACTTTTGAAG ATCTTGTTAT TGCTAAGAGT 
    TCAATAGGAT TAGCAGTTCT AGGACTCGAT ATAGAATTTG AGAGATTCGA 
    TTGTGTTCAA CTCAATTCCT GTTGCTTTTT AGGCAACATA CGAGAAAGGA 
    ACTGATGATG AGATTGCTGA GTTTATTTAC CAGACTTTGG ATGTTAATGG 
    CAATGGGGTC TTGAGAAGGT CTGATTTAGA GTCGTTCCTG GTGGTGATTT 
    TGAAGAGTGT GTTCTCCACT GAGAGTTCTG ATGCGGAATC AAGTGATTAC 
    AAGGAGATGG TAGATGCGCT ACTCGATGCC GCTACTTTCT CAAAATCTGA 
    TGATGGTTCT GAAAAAGGAA TGTCTTTTGA AGACTTCAGA AGCTGGTGCC 
    CACTCGTTCC AACTATCAGA AAGTTCCTCG GCAGCTTGCT TATTCCCCCG 
    GGTCCAGTGA GACCTGGATA TCAAGTCCCG GATCTGCTAT ATGAAGATAG 
    TGTGAGTTCA GATAGGCTAC TATTAAAGAA GGAATACGCT TGGCATATTG 
    GAGGAGCTCT TCCTCACCAC GAGCTTGTAG AGTGGAAGCT GTTGTATCGC 
    AGTTCCTTAC ACGGTCAAAG CTTCAACACA TTCCTCGGAC ACACATCGGG 
    GATGGAGGGA TCGAACATGG CCTGATGGAT GGACTGCAGT TACCGCAGAT 
    GGAAAACGCA GCGCTCAGTT TGAGCATACC CTATTGGTAA CTGAGACTGG 
    TGTTGAGGTT TTAACAGCGA GGCTTCCTTC ATCGCCTGAC GTATACCCTT 
    GGCTTACCAA GTGATTAAGT GTTTGGTTCC TTTTTGGTTG TGATTCATTG 
    GGTTTGATTC TTAAACTTGG GAATAATAGT GTCATCTTTT TGCCATTATA 
    GACCATTTGA TGTTGTTACC T

    Gene models with high sequence identity

    1. AT4G34070.1 [+] show detail - Calcium-binding EF-hand family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Peptidase M24A, methionine aminopeptidase, subfamily 1 3.9e-16
    HMMPanther Peptidase M24, structural domain 3.9e-16
    HMMPanther gb def: Similar to Magnaporthe grisea (Rice b 0.00045
    HMMPanther CALCIUM BINDING PROTEINS 0.00045
    ProfileScan EF-HAND 2 9.994
    superfamily EF-hand 4.4e-08
    superfamily Peptidase M24, structural domain 2.4e-11
    Gene3D Peptidase M24, structural domain 5.2e-08

    See the detailed result >

    AT4G34070.1

    Model type
    Protein coding
    Short Description
    Calcium-binding EF-hand family protein
    Computational Description
    Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: TLD-domain containing nucleolar protein (TAIR:AT5G06260.1); Has 171 Blast hits to 168 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 68; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR