F30205

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30205

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30205

Determination of introduced cDNA(s)

  • RAFL06-69-N06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-69-N06 - Resource: pda03331

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-69-N06 - full reading 
    ATACAACAAA AAGTCATGGC TTCTTCTTAC ACACTTATGC TCTTCCTTTG 
    CCTCTCCATC TTCCTTATAG CTTCCACTGA GATGATGGCG GTGGAAGGAA 
    GAATTTGCGA GAGGAGAAGC AAGACATGGA CAGGGTTTTG TGGCAACACT 
    CGTGGCTGTG ACAGTCAGTG TAAGAGATGG GAACGTGCTT CACACGGGGC 
    TTGTCACGCT CAGTTCCCGG GTTTCGCATG TTTCTGCTAC TTCAATTGCT 
    GAAGCAAGCA TACTCTTAAG AGTTGTGTGA ATCTTCTTCA ACGGTCACTT 
    TTATATCTTG TAGCAAATCC TAATCCCTAT ATGTCAAAAC CGTTATCTTT 
    AGCTTGGGTT TCAGTAATAA AAATTCCCCT TTGGTTTTTG GGAATTTTCT 
    TTGATAAAAT ATATAATAAG AGACTGGCAA GGCTATCTTC TTCGAAAAAA 
    AAAAAAAAAA

    Gene models with high sequence identity

    1. AT1G19610.1 [+] show detail - Arabidopsis defensin-like protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Scorpion toxin-like 8.4e-14
    HMMPfam Gamma thionin 1.5e-12
    PatternScan Gamma thionin 0
    BlastProDom Low-molecular-weight cysteine-rich family 0.002
    HMMSmart Knottin 1.3e-10
    Gene3D no description 2.6e-17

    See the detailed result >

    AT1G19610.1

    Model type
    Protein coding
    Short Description
    Arabidopsis defensin-like protein
    Curator Summary
    Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
    Computational Description
    PDF1.4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Low-molecular-weight cysteine-rich family (InterPro:IPR020191), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: plant defensin 1.3 (TAIR:AT2G26010.1); Has 153 Blast hits to 153 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR