F30208

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30208

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30208

Determination of introduced cDNA(s)

  • RAFL02-01-C03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-01-C03 - Resource: pda00098

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-01-C03 - full reading 
    GTGAACTTAA CGTCTCTCTC TATTCCTCTG CTTCTCTCTT TCTCCCTGTG 
    AAAAAATGGA CTCGGTGGCT CTCTACTGCA CCGCTGGTCT CATTGCCGGC 
    GCCGTCTACT GGTTCATATG CGTCCTAGGT CCAGCAGAAC GAAAAGGCAA 
    ACGAGCCTCT GATCTCTCCG GCGGCTCAAT CTCCGCAGAA AAAGTCAAAG 
    ACAACTATAA CCAATACTGG TCTTTCTTCC GCAAACCAAA AGAGATCGAA 
    TCAGCCGAGA AAGTACCTGA CTTCGTCGAC ACGTTCTACA ATCTTGTCAC 
    TGATATCTAC GAGTGGGGAT GGGGACAATC TTTCCATTTC TCTCCTCATG 
    TCCCTGGAAA ATCCGACAAA GACGCCACAA GAATCCACGA AGAAATGGCC 
    GTCGATCTCA TCAAAGTGAA ACCGGGACAA AAGATTCTTG ACGCTGGTTG 
    CGGCGTGGGT GGGCCGATGA GAGCCATCGC GGCCCATTCC AAGGCCCAAG 
    TCACTGGAAT CACTATCAAC GAGTACCAAG TGCAACGAGC CAAGCTTCAC 
    AACAAGAAAG CTGGACTTGA TTCTCTCTGC AACGTCGTTT GTGGTAACTT 
    TTTAAAGATG CCGTTCGATG AAAACACGTT TGACGGAGCT TACTCGATCG 
    AAGCTACGTG TCACGCTCCT AAGCTCGAAG AAGTATACTC GGAGATCTTC 
    AGAGTGATGA AACCAGGATC TTTGTTCGTG TCCTACGAAT GGGTCACCAC 
    TGAAAAATAC AGAGACGATG ACGAAGAACA CAAGGACGTG ATTCAAGGGA 
    TCGAGAGAGG AGACGCACTT CCTGGACTAA GAAGCTACGC TGATATAGCC 
    GTGACGGCGA AGAAAGTTGG GTTTGAGGTA GTGAAGGAGA AAGATTTGGC 
    TAAACCACCG TCTAAACCGT GGTGGAACCG GTTAAAGATG GGAAGGATTG 
    CTTATTGGAG AAACCATGTT GTGGTTGTGA TTCTTTCTGC TATTGGGGTT 
    GCTCCTAAAG GAACTGTTGA TGTTCATAAG ATGTTGTTTA AGACTGCTGA 
    TTATTTGACC AGAGGTGGTG AGACTGGAAT CTTCTCTCCG ATGCATATGA 
    TTCTCTGTAG AAAACCAGAG AAAGCTTCTG AATGAATGAT TGAGAATCTT 
    CTTCCTTGTT CTCGTTTTTC TTCTTCTTTC TTTCTAAGTT CATGTTTTGC 
    CCCTTAAGAA TCTCTTTGTC GTCGTATTAA TGTTATCACT TTGTTGTTTA 
    TTGTATTTTT TTTTTTCAAT TTGATTTGTT TAAATTGATG ATGGATCACT 
    GG

    Gene models with high sequence identity

    1. AT1G76090.1 [+] show detail - sterol methyltransferase 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily S-adenosyl-L-methionine-dependent methyltrans 3.2e-55
    Gene3D no description 1.3e-41
    HMMPfam Methyltransferase type 11 3e-20
    HMMPfam Sterol methyltransferase C-terminal 4.7e-15
    HMMPanther S-ADENOSYL-L-METHIONINE:DELTA24-STEROL-C-METH 2e-206
    HMMPanther METHYLTRANSFERASE 2e-206
    Coil coiled-coil 0

    See the detailed result >

    AT1G76090.1

    Model type
    Protein coding
    Short Description
    sterol methyltransferase 3
    Curator Summary
    Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway.
    Computational Description
    sterol methyltransferase 3 (SMT3); CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: sterol methyltransferase 2 (TAIR:AT1G20330.1); Has 10191 Blast hits to 10184 proteins in 2043 species: Archae - 312; Bacteria - 6392; Metazoa - 125; Fungi - 424; Plants - 648; Viruses - 0; Other Eukaryotes - 2290 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR