F30240

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30240

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30240

Determination of introduced cDNA(s)

  • RAFL14-37-I17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-37-I17 - Resource: pda18518

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-37-I17 - full reading 
    GGGGTCAAAT TCATTTCAAC TGATTCAATC AATTCTCATG AATTCCATCT 
    TGTCAAGCGT CCTTCCTGCT CCCGAAGATC CTGTTCTCAG TAATTTTTGC 
    TTGTAGAGAT GATCCTAGTC CGGTTAAGTT GAATTTGAGC GCAGGTACCT 
    ATCGAACTGA GGAAGGAAAG CCTCTTGTTC TTGATGTTGT GAGAAGAGCA 
    GAGCAACAGT TAGCCAACGA CCTGTCTAGG GACAAGGAAT ATCTTCCCCT 
    CAATGGACTT CCTGAATTTA ATAAATTAAG TACCAAGCTC ATCTTAGGTG 
    ATGATAGTCC TGCATTGAAA GAGAATAGAG TTGTTACAAC CCAATGTTTG 
    TCTGGTACTG GTTCTTTGAG AGTTGGAGCT GAGTTTCTAG CAACACACAA 
    CAAAGAAAGT GTCATTTTCG TTCCAAACCC AACGTGGGGG AACCATCCCC 
    GTATTTTTAC TTTGGCGGGT TTGTCTGTCC AGTATTTCCG TTATTATGAT 
    CCGAAGAGCC GAGGACTCGA CTTCAAAGGC ATGCTCGAGG ATCTTGGCGC 
    TGCACCTCCT GGAGCTATAG TGGTACTTCA AGCTTGTGCG CATAACCCCA 
    CAGGAGTTGA CCCAACATTC GAACAATGGG AAAAGATTCG ACGACTAGTG 
    AGATCGAAAA GCTTATTACC TTTCTTTGAT AGTGCATATC AGGGTTTTGC 
    TAGTGGTAGC CTTGACGCAG ATGCACAAGC GGTTCGTATG TTTGTAGCCG 
    ATGGAGGTGA ATGTTTGATA GCTCAAAGTT ATGCCAAAAA TATGGGCCTT 
    TATGGGGAGC GTATTGGCTC TCTTACGATC GTATGCACAT CAGAAGATGT 
    CGCTAAGAAA GTTGAGAACC AAGTGCTACT TGTTGTGAGG CCTATGTATC 
    TTACACCACC TATTCATGGT GCATCTATTG TTGCCACAAT TCTAAAAAAC 
    AGTGATATGT ACAATGACTG GACCATTGAG CTGAAAGGAA TGGCTGACCG 
    CATAATTAGC ATGCGTCAAC AGTTATATGC AGCTCTAGAA GCTAGAGGAA 
    CACCTGGTGA TTGGAGTCAC ATTATTAAAC ATATTGGGAT GTTTACTTTT 
    ACCGGATTGA GTGAGGAGCA AGTTCGCTTG ATGGCCAAAG AATATCACAT 
    TTACATGACT TATGATGGGA GGATAAGCAT GGCAAGTCTA AGTTCGAAGA 
    CAGTGCCTCA ACTCGCTGAT GCTATACATG CTGTTGTTAC TCGCATCGCC 
    TAATTAAATT TGCGATTCTG TTCTTTTGTT GTTTAATTTA TGAACACAAT 
    TAGAGAATAA AACTGCGTTC TTGGTTTACA TTTAATAAGA TAGCACAAAG 
    AAGCAATATT ATGGATGATA TTGTTTCTAG TTGGTAGTCA AACCTACCAA 
    AATGAGGATT GGGACCTTTA AACCAACACA GTTTTTTATA TTTTGTTTTC 
    ATTTTCAATT TATATAATAA AGATTACATC AATTAACAAC AAAAAAA

    Gene models with high sequence identity

    1. AT1G62800.2 [+] show detail - aspartate aminotransferase 4
      E-value: 0; Score: 99.87

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Aspartate/tyrosine aminotransferase 3.1e-33
    FPrintScan Aspartate/tyrosine aminotransferase 3.1e-33
    FPrintScan Aspartate/tyrosine aminotransferase 3.1e-33
    FPrintScan Aspartate/tyrosine aminotransferase 3.1e-33
    superfamily Pyridoxal phosphate-dependent transferase, major domain 5.7e-110
    HMMPanther Aspartate/other aminotransferase 9.6e-240
    PatternScan Aminotransferases, class-I, pyridoxal-phosphate-binding site 0
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 2.1e-105
    HMMPfam Aminotransferase, class I/II 6.6e-94

    See the detailed result >

    AT1G62800.2

    Model type
    Protein coding
    Short Description
    aspartate aminotransferase 4
    Curator Summary
    Encodes aspartate aminotransferase (Asp4).
    Computational Description
    aspartate aminotransferase 4 (ASP4); FUNCTIONS IN: transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: biosynthetic process, cellular amino acid metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase 2 (TAIR:AT5G19550.1); Has 5813 Blast hits to 5806 proteins in 1432 species: Archae - 0; Bacteria - 3885; Metazoa - 484; Fungi - 405; Plants - 390; Viruses - 0; Other Eukaryotes - 649 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR