F30333

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30333

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30333

Determination of introduced cDNA(s)

  • RAFL03-07-E18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-07-E18 - Resource: pda00223

    full reading [+] show sequence

    Nucleotide sequence: RAFL03-07-E18 - full reading 
    GTCTCCCACC TTTGACTCGC CCTGGGGGGA TTTTTTTTTG CTCCAGAGGC 
    GAAAGAAACA AAAAAAAGCA ATGGGGTTTC TCCGTTGTCT CCAGCTGCTG 
    CTGCTTCTGT TTCTATCTCT TCGTCTACAA AAGCTCTCTG CTCAATCTTC 
    TTCACCCAAT GCTTCTTCTT CTTCTTCACT CGATGCTCTT CTTCAAGATT 
    ACTCTTTTAG AGCCTTGCTT CGTCCTCGTA CCGGCATTCT CTACGAGGCT 
    ACTACTGTTC CTTCCAATTT GACTGGGATC AAACTCGCTG CTATGAGACT 
    CAGAAGCGGA AGCTTTAGAA AACGTGGAGT CACTCCTTTT AATGAGTTCT 
    CAATTCCCAG CGGCGTTATC GTCAAGCCGT ATGTGACAAG GCTTGTTTTG 
    GTTTATCAAA ACCTAGCTAA TTTCTCTCAC TTGTATTACC CTTTGTCTGG 
    TTATGATTAT GTCGCTCCTG TCTTGGGTCT TCTCGCTTAC GATGCTAAGA 
    ATCTCTCTGC GCTTAATTTG CCTCAGCTTG ATTTAAGGGT GTCTAATGAT 
    CCTATCAGAA TCGATTTCTC TGATCTGGAA CGAATCCCGC AAGGGTCTAG 
    TGCTAAGTGT GTTAGATTCG ATTCTAAAGG TGAAGCGAGT TTCAGCGATT 
    CGATTCAGCC TGGAAACACA TGCGAGACTG AGCATCAGGG ACATTTCTCT 
    GTGGTGGTGA AATCTGTGGC TTCTGCTCCG AGTCTAGCTC CTCCTGGGAT 
    TGAGAGTAAG AAGAAGAAGA AGAGCTCTGA TTCCAATTCC AAGACTTGGA 
    TCATTGTTGG GTCGGTGGTT GGTGGATTGA TACTGTTGGG GCTTTTACTG 
    TTTCTGGTTT TGAGATGTCG AAATTACAAG AAGCAAGAGA AAATGAGGGA 
    GATGGAGAGA GCTGGAGAGA CAGGGGAAGC TCTGAGGATG ACTCAGGTTG 
    GTGAAACAAG AGCACCAACT GCTACTACGA CTCGTACACA ACCAATGCTT 
    GAAACCGAAT ACGCAGCTTA GGATACTTTT GTGTACATCA TCATCATCAT 
    CACATCTTCT TGATCATCTG TTACTGTCTT TTTCTTTTTT TCTTCTACAA 
    TTATTCTTCT TTTGGTAAAG TGTTTCTTTT TCTGATTATT TTTTCTTTGT 
    GGTAAGCAAG TTGATACTTC CACATTCATC TTGTTTCTCT GCTGGTGATA 
    AGGAAATAAG TAATATTGTT TTCTT

    Gene models with high sequence identity

    1. AT3G08600.1 [+] show detail - Protein of unknown function (DUF1191)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther INTEGRIN ALPHA-PS 0.0004
    HMMPanther INTEGRIN ALPHA 0.0004
    HMMPfam Protein of unknown function DUF1191 6.5e-107

    See the detailed result >

    AT3G08600.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1191)
    Computational Description
    Protein of unknown function (DUF1191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1191 (InterPro:IPR010605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1191) (TAIR:AT4G22900.1); Has 124 Blast hits to 124 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR