F30338

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30338

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30338

Determination of introduced cDNA(s)

  • RAFL06-81-P04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-81-P04 - Resource: pda03816

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-81-P04 - full reading 
    AACTCAAATT ATGGGGTATA GAAGAAGCTA CGCAATCACA TTTGTAGCCC 
    TTGTGGCGGC TCTATGGAGC GTAACAAAAG CACAGCCGAG CAGTTCATGC 
    GTGAGCACAC TGACCACTCT CTCTCCGTGC CTCAGCTACA TCACCGGAAA 
    CTCAACCACT CCCTCACAGC CTTGCTGTTC TCGGCTCGAC TCTGTCATCA 
    AATCTTCGCC GCAGTGCATC TGCTCAGCCG TCAACAGTCC GATCCCAAAC 
    ATCGGCCTTA ACATTAACCG CACACAGGCC TTGCAGCTCC CCAATGCCTG 
    CAACATTCAG ACGCCTCCCC TCACACAATG CAACGCGGCC ACTGGTCCAA 
    CAGCACAGCC TCCCGCACCC TCACCGACGG AAAAGACCCC AGATGTGACA 
    CTAACCCCAA CCTCATTGCC GGGTGCTCGT TCAGGAGTTG GAGGTGGTTC 
    CAAGACAGTT CCCTCCGTTG GTACCGGCTC GTCCAGCAGG AATGTTGACC 
    CCTTGCCGCT GCATTTTCTT ATGTTTGCTG TATTGGTGGT CTGCACTTCT 
    TCTTTTCTTT AACCAATTCT GAGAGTTCAT GTATTTGGTA ATTTCATTTC 
    ACTTGCTGTG CCAGATTGAT CATAAGCGAG ACATGTTTTT TGTTTGTATT 
    GCTCAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT2G48130.1 [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 6.7e-07
    superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 3e-23
    HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 9.8e-10
    FPrintScan Plant lipid transfer protein/Par allergen 6.1e-06
    FPrintScan Plant lipid transfer protein/Par allergen 6.1e-06
    FPrintScan Plant lipid transfer protein/Par allergen 6.1e-06
    Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 3.4e-06

    See the detailed result >

    AT2G48130.1

    Model type
    Protein coding
    Short Description
    Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
    Computational Description
    Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22600.1); Has 1201 Blast hits to 1197 proteins in 63 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 0; Plants - 1190; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR