F30409

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30409

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30409

Determination of introduced cDNA(s)

  • RAFL06-16-I03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-16-I03 - Resource: pda03252

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-16-I03 - full reading 
    GAGATCCCAT TTCTTTTGTT GGCTTACTTC TCTCGAATTT ACGCAGGAAG 
    ATCATTAGCA GAGAATTCTC ATCTGATTCA GTCCATGGCT GCCACGGCTC 
    TTTTCCGATC GATTCGTCGA CGCGACGTCG TCTCCGCGCC TCTTTCCGTT 
    TACAAATCCC TTGCTGGTAA TGCTCAACCT TCCTGGGGTA GTTCATACAT 
    TGGTCAGAAC TATGCAAGTT TCTCCAGAGC TTTCGGGTCA AAACCTGTTG 
    TGAATGACAT TCTTGGTACT GGTTTGGGCA CTAACAATGC CATTAGAGAG 
    GAGAGAGAGA AGTCAAAATC TACTGAAGCT GCAATTGTTG GTGCTCAATT 
    GACTCGATCT TTCCGTGCTC TTGATGTGGG AACATCGAAA CGATTGTTTT 
    CTACAATCTC AGGGGATATA AAGACAACAC AGGAGGAACC AAAAATCAAA 
    AGCTTTCGCC CTTTATCTCC TCACCTTTCT GTTTACCAGC CTCAGATGAA 
    CTCCATGCTA TCGATTTTCA ACAGAATCTC AGGGGTTTAC TTGACCGGTG 
    TCACTTTCGC TGGCTACCTT CTCTACCTGA AGATGGGTAT GATCTGCCTC 
    ACCTACCCGA GTTTCTACCA AGTCCTTTAC CATACACAAC AGCAACTTCC 
    AGTCATCACC TCGGTTACTG CATTAGCCGC TATTTATCAT ACTATCAAGA 
    GTACTCACTC ACTCTTGACC CATTAAAAAC CTTTACCAAA GCTCTTTCGA 
    TGAAGCCGCC AAAGTCTCCA GTAAGAGTTT CTTTGAGATG ATTAATAAGG 
    AGACAAGAAA ACATTTGTTA AACTCTGTCT TGAAAAGGTA AAGATTTAGC 
    ACCTGTTTCT TTGGATTCGA GGCTTTTTTG GGGGTATGTT TGTTGCTTTT 
    CTTTGTTCTC AGACCTTTTT TTGAATGATG TAATAAATGT TTACCAAAGT 
    TCTGTTGCTA CGTTACTCTT TTTGTT

    Gene models with high sequence identity

    1. AT4G32210.1 [+] show detail - succinate dehydrogenase 3-2
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Fumarate reductase respiratory complex transm 1.1e-11
    HMMPanther SUCCINATE DEHYDROGENASE CYTOCHROME B560 5.5e-10
    HMMPfam Succinate dehydrogenase/Fumarate reductase, transmembrane subunit 3.7e-11
    Gene3D no description 9.3e-10

    See the detailed result >

    AT4G32210.1

    Model type
    Protein coding
    Short Description
    succinate dehydrogenase 3-2
    Curator Summary
    Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-1.
    Computational Description
    succinate dehydrogenase 3-2 (SDH3-2); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-1 (TAIR:AT5G09600.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR