F30437

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30437

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F30437

Determination of introduced cDNA(s)

  • RAFL11-01-C09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-01-C09 - Resource: pdz88385

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL11-01-C09 - 5 prime EST
    GATCTTGATA TCTTCACCGC CTGCCGATCT CTCTCAATCT CCGATCAACC 
    ATGAGCAAAG GTCCAGGACT CTTCACCGAT ATCGGCAAGA AAGCCAAAGA
    TCTGTTGACG AGAGACTACA ATTCCGATCA GAAGTTCAGT ATCTCCACTT
    ACAGTGCCTC CGGCGTGGCC CTTACGTCTA CTGCTCTGAA GAAAGGAGGA
    GTTCATGCTG CTGATGTTGC CACCCAATAC AAGTACAAGA ATGCTTTGTT
    TGATGTTAAA ATCGACACTG ATTCTAGTGT TTTGACAACA GTCACACTTA
    CCGAGATCCT CCCATCAACA AAAGCCATTG CCTCCTTCAA AGTCCCTGAT
    TATAATTCCG CCAAGCTCGA GGTGCAATAC TTCCACGACC ACGCAACAGT
    TACCGCTGCT GCAGCTTTGA AACAAAACCC ACTAATTGAC ATAACAGCTA
    CTCTTGGTTC GCCAGTCATC TCATTTGGTG CTGAAGCTGG ATATGACACA
    ACCTCCAAAA CTTTCACCAA GTACAATGCC GGGATCAGTG TGACAAAACC
    AGATGCTTGC CTCTCCATAA TATTGGGAGA CAAAGGANAC TCACT

    Gene models with high sequence identity

    1. AT5G67500.1 [+] show detail - voltage dependent anion channel 2
      E-value: 0; Score: 99.83

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL11-01-C09 - 3 prime EST
    CAAGAAGAGT GCTTAATTAT AAAAGAAAGA TAAAAAAAAA ACCAAAACCG 
    AGCATATCCA AAAAAAGAAT TATCCGTCAA TTTCACTGCG GAACTATTTA
    TTGATTCCAA TTAAACGTAA GGAAAAAAGG AGGAAAAAAA CGCTAACTCT
    CACGTCCTGC CGTAGAGGAA ATCAACAATG AGAGCATACG AGAAAAGTAG
    GAAGACTCAA GCAGGTCTGA TGTGAGTGTG TGTTCTCAAG GTTTGAGAGC
    AAGAGAGAGA CCAAACCTTG GATGCTTTTC TAAAGCCTTA GTGTCATCTC
    ACTGGAAACA GTCACTATTG ATCTGGGCAG GACCTCGTGC TGCAGAAGAG
    CACCAATTGT GCCATGGTTG TTGAGCTTAG CTTTCACTGC AGTCGAATGA
    TCAATCGCAT ACAATCCACC AACCGTTATC GTG

    Gene models with high sequence identity

    1. AT5G67500.2 [+] show detail - voltage dependent anion channel 2
      E-value: 0; Score: 99.31

    AT5G67500.1

    Model type
    Protein coding
    Short Description
    voltage dependent anion channel 2
    Curator Summary
    Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
    Computational Description
    voltage dependent anion channel 2 (VDAC2); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: response to bacterium, anion transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 5 (TAIR:AT3G49920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT5G67500.2

    Model type
    Protein coding
    Short Description
    voltage dependent anion channel 2
    Curator Summary
    Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
    Computational Description
    voltage dependent anion channel 2 (VDAC2); CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 5 (TAIR:AT3G49920.1).
    Link
    InterPro Scan - TAIR