F30514

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F30514

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F30514

Determination of introduced cDNA(s)

  • RAFL19-03-N19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL19-03-N19 - Resource: pda10894

    full reading [+] show sequence

    Nucleotide sequence: RAFL19-03-N19 - full reading 
    ATTCATCCGT CTCTGCAAAC AAAGGAAGAA GAATCAAGAT GGCTCTGGAA 
    ATCTGTGTGA AAGCTGCTGT TGGTGCTCCT GATCATCTCG GCGACTGTCC 
    GTTCAGCCAA CGGGCTCTTC TCACACTCGA GGAGAAGAGT CTTACCTACA 
    AAATCCATCT GATTAACCTC TCTGACAAAC CCCAGTGGTT CTTGGACATT 
    AGTCCTCAAG GGAAAGTACC AGTGCTTAAG ATCGACGACA AGTGGGTGAC 
    TGATTCCGAC GTCATCGTTG GTATACTCGA GGAGAAGTAT CCTGATCCAC 
    CACTCAAGAC TCCTGCTGAA TTTGCCTCTG TTGGATCCAA CATTTTTGGT 
    ACTTTTGGGA CATTCTTGAA GAGCAAAGAC TCCAATGACG GATCTGAACA 
    TGCCTTGCTT GTTGAGCTAG AAGCTTTGGA AAACCATCTT AAGAGTCACG 
    ATGGCCCTTT TATCGCCGGA GAAAGAGTTT CCGCAGTGGA TCTAAGCTTA 
    GCACCAAAGC TTTACCACCT TCAAGTTGCT CTTGGCCATT TCAAAAGCTG 
    GTCTGTCCCT GAGAGCTTTC CCCATGTCCA TAACTACATG AAGACTCTGT 
    TCTCGCTCGA CTCTTTTGAG AAAACTAAGA CCGAGGAAAA GTATGTGATC 
    TCTGGATGGG CTCCCAAGGT TAACCCTTGA AACTATGCAC CGTTATGAGA 
    TCGTTGGTGT GGTAATGTTG TTCAAGGTCT CTCTCTTATA TCAGTCAAAT 
    AATGTACTTG GACCTTTTTA TGTAATGTAC TGTATCAATC AAATAAGAAG 
    CCTATTTTGA AAT

    Gene models with high sequence identity

    1. AT1G19570.1 [+] show detail - dehydroascorbate reductase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Glutathione S-transferase, N-terminal 16.453
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 11.948
    Gene3D Thioredoxin fold 4.7e-20
    Gene3D Glutathione S-transferase, C-terminal-like 1.4e-37
    HMMPfam Glutathione S-transferase, C-terminal 3.1e-08
    HMMPfam Glutathione S-transferase, N-terminal 5.7e-08
    superfamily Glutathione S-transferase, C-terminal-like 3.2e-26
    superfamily Thioredoxin-like fold 2e-21
    HMMPanther DEHYDROASCORBATE REDUCTASE 3.3e-133
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 3.3e-133

    See the detailed result >

    AT1G19570.1

    Model type
    Protein coding
    Short Description
    dehydroascorbate reductase
    Curator Summary
    Encodes a member of the dehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.
    Computational Description
    dehydroascorbate reductase (DHAR1); FUNCTIONS IN: copper ion binding, glutathione dehydrogenase (ascorbate) activity; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: dehydroascorbate reductase 2 (TAIR:AT1G75270.1); Has 5234 Blast hits to 5161 proteins in 1116 species: Archae - 0; Bacteria - 2090; Metazoa - 1076; Fungi - 186; Plants - 896; Viruses - 0; Other Eukaryotes - 986 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR