GT119

CSHL Arabidopsis genetrap mutant lines

Original: GT119

Phenotypes

Morphological phenotypes

Original description

  • pale green plants
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • desaturated green (PATO:0001272)

Original: GT119

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4692306 [Map]; Strand: w
      • AT1G13680.1 - [+] show detail - PLC-like phosphodiesterases superfamily protein
        Distance: 0; Region: intron5 (CDS)
      • AT1G13690.1 - [+] show detail - ATPase E1
        Distance: -983; Region: promoter
    Flanking Genome Sequence: GT119 - 3-prime edge 
    TAATTGCTAC ATTCATCTGG TTTAACTCCA TCGTCTCCAT CTAACAATCA 
    ATACCACGTT GGGATTAATC CGTGATATCT AAACAAACTA AAATTAAACC 
    GGAATTTTGG T

AT1G13680.1

Model type
Protein coding
Short Description
PLC-like phosphodiesterases superfamily protein
Computational Description
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling pathway, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT1G49740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G13690.1

Model type
Protein coding
Short Description
ATPase E1
Curator Summary
AtE1 - stimulates the ATPase activity of DnaK/DnaJ
Computational Description
ATPase E1 (ATE1); FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 3 (TAIR:AT5G61030.1); Has 14554 Blast hits to 12500 proteins in 724 species: Archae - 8; Bacteria - 1323; Metazoa - 7103; Fungi - 1824; Plants - 2936; Viruses - 0; Other Eukaryotes - 1360 (source: NCBI BLink).
Link
InterPro Scan - TAIR