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Mutant Lines
GT12422

GT12422

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT12422

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Not mapped
Flanking Genome Sequence: GT12422 - 3-prime edge
```
GTTACCGAGT GTGAAGCAAG ATGTGGATTC AGCTATATGG TG
```

3 prime edge [+] show sequence

Chromosome: 2; Position: 10886487 [Map]; Strand: w
- AT2G25570.3 - [+] show detail - binding
  Distance: 0; Region: intron6 (CDS)
- AT2G25570.1 - [+] show detail - binding
  Distance: 0; Region: intron6 (CDS)
- AT2G25570.2 - [+] show detail - binding
  Distance: 0; Region: intron6 (CDS)

TACAAAGAGC CAGCTTCTGT TTTCGTTTCA TTACTGCCTC ATTAGTGTAA 
ATTCTGCGCT ATAGTTATCA TCATATGTTC TACTTTTGAA TATCGACGAA 
ACATGCATTG TCTTATGTCA AAATTTTATG TAAAATCTGT AAGAGTCTGT 
AAAGTGGTAT CTTCTTGTAG TTTCCATAGT CTGACATCTT CTTGTAAACG 
TTCAGGGACA TGCTGGTGCT GCTATAGCAT ATGGATCTCT TTTACTTAGA 
GGTTAGTAAT CCTCTTTCAG CACAGACTTA TCTTGCTTCT TTTACATCAG 
ATCCTCATGG CTATCCAAAG TGGATTTGTT TTTTGGTCAC TCCTGGGCTT 
TCTAGATCTT AGGA

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 10887403 [Map]; Strand: w
  - AT2G25570.3 - [+] show detail - binding
    Distance: 0; Region: exon3 (CDS)
  - AT2G25570.1 - [+] show detail - binding
    Distance: 0; Region: exon3 (CDS)
  - AT2G25570.2 - [+] show detail - binding
    Distance: 0; Region: intron2 (CDS)
  - AT2G25580.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: -611; Region: promoter
Flanking Genome Sequence: GT12422 - 5-prime edge
```
ACTTTCTCCC TGCATGGTAC TTCAGGTGCA ACTTGGAAAG CCAATACCTA 
GCATGAGTGT TCAAATTATC AGCTTCCAGA GCAAGTTCAA AGTTCTCTTT 
AGCTCCCTAT AACCAGAAAA AAAAATCATA TTTAGAAATA AACACCAACG 
ATACAAAGCA CTACATTCAA ACACTTATGG CATACATAAG TGTTATACCC 
TGAGGAGAGG AATAAGACGA CGATCATTGA GTTCACAGTA ATCGATAACT 
CTCTCTACTT CATCTCACTC GA
```

AT2G25570.1

Model type: Protein coding
Short Description: binding
Computational Description: binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); Has 3445 Blast hits to 2037 proteins in 553 species: Archae - 0; Bacteria - 2582; Metazoa - 139; Fungi - 7; Plants - 69; Viruses - 6; Other Eukaryotes - 642 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G25570.2

Model type: Protein coding
Short Description: binding
Computational Description: binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); Has 3322 Blast hits to 1984 proteins in 539 species: Archae - 0; Bacteria - 2536; Metazoa - 84; Fungi - 3; Plants - 65; Viruses - 6; Other Eukaryotes - 628 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G25570.3

Model type: Protein coding
Short Description: binding
Computational Description: binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G25580.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description: Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G32450.1); Has 21306 Blast hits to 10572 proteins in 176 species: Archae - 0; Bacteria - 9; Metazoa - 6; Fungi - 21; Plants - 21172; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Link: InterPro Scan - TAIR