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GT12990

CSHL Arabidopsis genetrap mutant lines

Original: GT12990

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT12990

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19328014 [Map]; Strand: c
      • AT2G47040.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT12990 - 5-prime edge
    CCTACTTTCT CCCTGGTTGT AAGATTTGCT TTTTGTTTGT CTCACGTATG 
    AAAGATGAGG AAAAAAAAAA TATTGAAAAT TTAGGTGGTT GGATTTTGGT
    TCCAAGGTTT GGGAATAAAA AAATTTATCC GCTGGGTTGT ACCTATGTTT
    AATAACCTTT TTAAAATATT ATAATTTAAC TAATTTATTT TACGTTGTTG
    CCAATTCTCT AATTTACTGA AATTATTATG GACATTCATA TAATTAACTT
    GCCCGATATT TCTCCATTTG GGGTTTACTT TGAGACAAAG GAACAAT

AT2G47040.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Curator Summary
Share high homologies with a group of pectin methylesterases (PME), pollen specific, and is required for enhancing the growth of pollen tube in style and transmitting tract tissues.
Computational Description
VANGUARD1 (VGD1); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: pollen tube growth; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G47030.1); Has 2977 Blast hits to 2908 proteins in 464 species: Archae - 6; Bacteria - 891; Metazoa - 1; Fungi - 197; Plants - 1856; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR