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GT13266

CSHL Arabidopsis genetrap mutant lines

Original: GT13266

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13266

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17960770 [Map]; Strand: w
      • AT2G43210.2 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G43210.1 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT13266 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACTCCGAT 
    CAAATGCTGA AGAACGAAGA AGCTACGAGT AGATCAGACG CAGTTAACGA 
    CTTAACGCCA CCGTCACAAT AACGTCGTTA CATGTTTGTT ATTAAATATT 
    TATGAGGTCC ATTAAAGTTT TCAAAATATC TAAATGCACC TCTTAATTTT 
    TGTAATTGTC CAATTTAAAC CCAAACCAAC AACTCTCTCA AAAGTTTCCA 
    AATTTTTTGT AGTAGTGTGT GATACCAAAA AGAGTTTTAT TTAATTGAGT 
    TATCTACGAT TAGTATTGTT CCATGATCGA AAACACTATT ATCTTCTGGA 
    TACATTGTCC CATTCCATCT CATTTGATTG GTTATGGCTT TCACTTTGAC 
    AAGAACATCA AAACGGTCTC GTATTATAAC TGCTCCTTCT GGTCTAAGAA 
    TCCTCTGCAT CTCCAAGAGT ATATCAACAA TGTCACATCT ATCATAAGAA 
    ACAAAGAAAA AGAAACCATT ACACTTTGAT CACCAAATGA ATGTAAATCA 
    AAGTTTTCAA GTTAGGGACG GATCTTACTT GTCCAAGTAC AAACTGAATA 
    CACCATTGGC ATGAATCAGG TCATAGGTTC GAGGGTATGT AGATAAAGCT 
    TCACACCTAC AAAAACCGGA AATATGGTAT AAGAGATGTC AAATTAGATG 
    ATATCAGAGA CGTTTTGAGT GATTTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17960828 [Map]; Strand: w
      • AT2G43210.2 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: 0; Region: intron1 (5UTR)
      • AT2G43210.1 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT13266 - 5-prime edge 
    CCTACTTTCT CCCTGGATCG GAGTAGGTAA AGTTGTGGAT CTCTTTGTTT 
    CTTGCTAATT CAAATTGATT AAGGTTCCTG GGTTTGATCG GCTCTAGCTA 
    GGGGTTTATG GTACTCGTTA TATAATTCAC TGAATTTAGG GTTCAAGGGT 
    TCTGATTGAT CTGCAGTGAC CTTTTTGATT GACAGATGAA AGCTCTGTCT 
    TCTCTTACGT TCAAGGGTTC TCTTCCAGAA GCCATATTTG AAGCCAAAGG 
    GAAGAAGAAG CTTTTTGTTG TCTACATTTC TGGTAAATTA ATGGAATTTT 
    ATTTCTCTCT TGTTGGAATT CGAATATGAG TGGGATAGTG TTAGGAGATT 
    TGTTTCTCCT GTAGTATCTC ATCTGAATAC GATTTCTGAT CATACAAGAA 
    TATGGCCTTT TAAGAAAAAG TTTCAACATT GAAGAGAGCC ATAATCATAT 
    TGTGAGCTCA ATCTCAAAAA ATTTAAATTT GTTTCCCAAT TTTAGGAGAG 
    GATGAAGAGT CGGATAAGTT GAACAGATTG ACTTGGACTG ATGCATCG

AT2G43210.1

Model type
Protein coding
Short Description
Ubiquitin-like superfamily protein
Computational Description
Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); Has 1416 Blast hits to 1005 proteins in 245 species: Archae - 0; Bacteria - 142; Metazoa - 386; Fungi - 259; Plants - 165; Viruses - 17; Other Eukaryotes - 447 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G43210.2

Model type
Protein coding
Short Description
Ubiquitin-like superfamily protein
Computational Description
Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); Has 1416 Blast hits to 1005 proteins in 245 species: Archae - 0; Bacteria - 142; Metazoa - 386; Fungi - 259; Plants - 165; Viruses - 17; Other Eukaryotes - 447 (source: NCBI BLink).
Link
InterPro Scan - TAIR