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GT13271

CSHL Arabidopsis genetrap mutant lines

Original: GT13271

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13271

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1417403 [Map]; Strand: c
      • AT2G04170.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon6 (3UTR)
      • AT2G04170.2 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon7 (3UTR)
      • AT2G04170.3 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon7 (3UTR)
      • AT2G04170.4 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: GT13271 - 3-prime edge 
    CCCTACTCAT AAGGGTTGTT TGATCGATGA CAGAAAAGTA GAGAATAGAG 
    ATATTTAAAT GGGAACAATG TTGGTCACAG AGACCTTCAC CATTTCAGCT 
    TCAAAGATAA TGGAATCATT CACCGAATAC CCTTTCGATG CATCATTGAA 
    TTCTGCTAAC GATATGATAG TGTTAACTCC CACACCATAA TCGCTTCGAG 
    TAGGGTACCA AGCTGCAGCT GCAAAACAAG AAACAAAAAA CAACTTATAT 
    CAACTATTAA CTTTATTCAA ACACTCGTGG ACATTAACAT GTTTTACTTA

AT2G04170.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04170.2

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04170.3

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04170.4

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR