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GT13285

CSHL Arabidopsis genetrap mutant lines

Original: GT13285

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13285

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13285 - 3-prime edge 
    ATCCCGTTTT CGTTCCCGTC CCGCAAGTTA AATATGAAAA TGAAAACGGT 
    AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13285 - 3-prime edge 
    CGTTCGTTTT CGTTACCGGC ATATCCCGTT TTCGTTTCCG TCCCGCAAGT 
    TAAATATGAA AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCAACC 
    GTTTTCATCC CTATACACAC ATTCTACCGG A

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1416684 [Map]; Strand: w
      • AT4G03210.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: 0; Region: exon3 (CDS)
      • AT4G03210.2 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: 0; Region: exon3 (CDS)
      • AT4G03220.1 - [+] show detail - Protein with RNI-like/FBD-like domains
        Distance: -788; Region: promoter
    Flanking Genome Sequence: GT13285 - 5-prime edge 
    GGAGTTGGAA ACAGAGAACA AAGACTCAAC CTTTGGTTCG ATCCCACCAC 
    TGAGTTTCAC ACTTACTCAA TCCTCTGGAG TAAACGCAGT GTTGTGTAAG 
    CTCTCTTATA CAAACAAAGT CTCTTCCTTT ATTTGATTAT TGAAGACCCA 
    TTTTAATGAT GTCTTCATTG CAAATACAGA TTCATGGTAG ACGAAACACC 
    GATTCGAGTT CAGAAGAATC TTGAAGAGAA AGGTATCCCA TTTGCTAAAG 
    ATCAAGCAAT GGGTGTTTAC AGCTCCATTT GGAATGCAGA TGATTGGGCT 
    ACACAAGGAG GTCTTGTTAA AACTGATTGG AGTCACGCTC CTTTCGTTGC 
    TTCTTACAAA GAATTCCAAA TCGATGCATG TGAGATTCCA ACTACTACTG 
    ATCTAAGCAA GTGTAATGGA GACCAGAAAT TTTGGTGGGA TGAACCAACT 
    GTCTCTGAGC TTAGCCTTCA TCAGAATCAT CAGCTTATTT GGGTTCGAGC 
    TAATCATATG ATTTATGATT ATTGTTTTGA TGCTACTAGG TTTCCTGTTA 
    CTCCTCTTGA GTGCCAACAT CATCGTCATT TGTAGTTTAG AAATTAGTCA 
    AGAATAAAAA TGGATCAAGA GAACATGTGG TACTCTTTGA TGATTCTGTT 
    TTAATGTATA AATAATCAAT TTCTATTGAT TTTGGTGAAG TTTTCAAGTT 
    AGGATTTTAA CTAACTATGC GAAATATATG GAAACAAACT CAACGCACTT 
    ATCGTTAATG ACTTTTAAGG GTTTGTTTTG ATTGAATG

AT4G03210.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 9
Curator Summary
encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
Computational Description
xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Beta-glucanase (InterPro:IPR008264), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 2067 Blast hits to 2047 proteins in 283 species: Archae - 0; Bacteria - 225; Metazoa - 0; Fungi - 377; Plants - 1377; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03210.2

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 9
Curator Summary
encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
Computational Description
xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03220.1

Model type
Protein coding
Short Description
Protein with RNI-like/FBD-like domains
Computational Description
Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G59210.4); Has 1478 Blast hits to 1464 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1476; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR