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GT13286

CSHL Arabidopsis genetrap mutant lines

Original: GT13286

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13286

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11428251 [Map]; Strand: c
      • AT1G31840.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 1723; Region: intergenic
      • AT1G31850.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -1971; Region: intergenic
    Flanking Genome Sequence: GT13286 - 3-prime edge 
    TTTTACCGAC CGTTATTCAC CGTTTTCATC CCTAACAACG TTATTATTTT 
    GATATCTACG TTTGGACTAA ATTTCTAATG ATTCAACAAA GTCACATACG 
    GATACGGTCC ACTAAATCTT AGTACTTCTG ATTATTTTTC AAAGGGTTAT 
    ATTATTACTG CAAATACTCA TAATTATAAG CAATAAATGA ATCTGTGAAG 
    GAGATGAGAG GTCAAGGGCC CTAATTATTT TTAGAAAAGG AGAGATCACA 
    AAGTTTTGTT TTTAAAATTC CAAAGCAAAA GGATAAAGGT AGATGCATTC 
    TTCTGTCGGT GCTCTTTATT CCTCAGCCGA CATTAAATAT TTTAATTCAA 
    TTTTTATTTT TATTTTTATT TTAATTAATG GAGTAATTAT TTGCAAGCCT 
    CGAAAAATAA AAAATAGAGC ATTGATTGAC GCTGAATGAA GTAGACTACA 
    AATTGCATCG TTCATGAAAA TACCATTCGT TGTTAGTACC AAAGAGAGTC 
    TCAAACTTTT GCTTGGATTA ATTTACTTGT TAAATGATAA TTGGTTGCTC 
    TGAATCGTAT ATCTACATAT CCCATGCACG TATTTTCTTT TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11427461 [Map]; Strand: c
      • AT1G31840.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 933; Region: intergenic
      • AT1G31850.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -2761; Region: intergenic
    Flanking Genome Sequence: GT13286 - 5-prime edge 
    TCCTGTAGCT AAAAAGATTA GCTAAAAAGT TTGATTTGGA CATTTATTAT 
    ACACTCAAGC ATCTACAATG ACATACACAC ATGGATGACT GATATTAATG 
    GTGATTACTT GTTTTTATAA ATATTAATAA TGACTTACAA AAATGTGTTC 
    GATATAAATA TTCGTATTTA AATTTTAAAA TAATACTAGC CAGATTAAAA 
    ATTGTCAATA TAATAACATG GTATAATTGT GTGTATTAAA TGTATCTCAT 
    AAATAGATAA TTATACAATA ATTCTTAATT CAATCGCAAA ATACAAACAA 
    AATAAATCAT TTTTGTCATT TGCAAATAAT GTAAAAAATA CAAATGTTTT 
    CTTTAGTTAC CTAACGCTAA CACCCTAACA CTGTATACGA GGCCCAAACC 
    GACATGACTG AACTCCCCCC CGGTTCACAA TTGAGGATTG AAACTACTTA 
    ATTTCAACTA CTTATTTGCT ATTTGAATCA AAAGGCGGAG CAATGAAAAC 
    CCGGTCTCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11427494 [Map]; Strand: c
      • AT1G31840.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 966; Region: intergenic
      • AT1G31850.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: -2728; Region: intergenic
    Flanking Genome Sequence: GT13286 - 5-prime edge 
    CCTACTTTCT CCGTTATGTA GACAAAATAT GGGTCCTGTA GCTAAAAAGA 
    TTAGCTAAAA AGTTTGATGC GGACATTTAT TATACACTCA AGCATCTACA 
    ATGACATACA CACATGGATG ACTGATATTA ATGGTGATTA CTTGTTTTTA 
    TAAATATTAA TAATGACTTA CAAAAATGTG TTCGATATAA ATATTCGTAT 
    TTAAATTTTA AAATAATACT AGCCAGATTA AAAATTGTCA ATATAATAAC 
    ATGGTATAAT TGTGTGTATT AAATGTATCT CATAAATAGA TAATTATACA 
    ATAATTCTTA ATTCAATCGC AAAATACAAA CAAAATAAAT CATTTTTGTC 
    ATTTGCAAAT AATGTAAAAA ATACAAATGT TTTCTTTAGT TACCTAACGC 
    TAACAGCCTA ACACTGTATA CGAGGCCCAA ACCGACATGA CTTAACTCCG 
    CCCCGGTTCA CAATTGAGGA TTGAAACTAC ATAATTTCAA CTACTTATTT 
    GCTATTTGCA TCAAGAGGCG GAGCAATGAA AACCCGGTCT CAATCGGTTG 
    AGTAAAACCG GGCCAACAGA TCTGGCACAT AGATGGTCAA TTGCCATTGG 
    TTTCGTTAAA TAAACCGGGC GAGGAGTTCT GGTACGGTCG TTATCAATCA 
    ATT

AT1G31840.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22470.1); Has 68904 Blast hits to 14697 proteins in 297 species: Archae - 6; Bacteria - 66; Metazoa - 698; Fungi - 1025; Plants - 65043; Viruses - 0; Other Eukaryotes - 2066 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G31850.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G19120.2); Has 1070 Blast hits to 1059 proteins in 86 species: Archae - 5; Bacteria - 108; Metazoa - 0; Fungi - 3; Plants - 946; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR