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GT13307

CSHL Arabidopsis genetrap mutant lines

Original: GT13307

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13307

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23562430 [Map]; Strand: w
      • AT1G63522.1 - [+] show detail - Defensin-like (DEFL) family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G63530.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein ...
        Distance: -885; Region: promoter
    Flanking Genome Sequence: GT13307 - 3-prime edge 
    TTTTTTTTTA CCCGACCGGT TACCGACCGT TTTTCATCCC TAAGTGCAAG 
    GATACAAGAA AGCACAAACG ATATATTGAA GCCTATAACA TGCAATACCA 
    ATGCAGATTG TGCCAAGTTT TGCAAAGGTC CAATCCACAA CTGTGTCTAT 
    CATACTTGTC AATGCGTACC CGGAAATCCT CATTGTTGCT AGAAACACCC 
    CAACACATTT TCTGATTCAA CATCTTTTAT GTTGGAATTT CCAACACAAA 
    AATAAATAAA ACTATGTTTC CTTTGGTCAT CTACTCTTTT TTTTTTTTTT 
    TTTTTTTCCC CCCAAATTTT GAAACCCCTT TTAAAAAAAA ACCCTTTTTT 
    AAAAAAAAAA AAGGAAAACC AAAACCTTTT GGGTTTTTTT TTGCCCAGAA 
    CCCCCCAAAA AAAAAAATAT TTTTTTTTTT AAAAAACGCG GTTTTTTTTT 
    TTCGGAGAAA AAAAAAAAAA AATTTTT

AT1G63522.1

Model type
Protein coding
Short Description
Defensin-like (DEFL) family protein
Curator Summary
Encodes a defensin-like (DEFL) family protein.
Computational Description
Defensin-like (DEFL) family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Defensin-like (DEFL) family protein (TAIR:AT1G63535.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G63530.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G63540.1); Has 10212 Blast hits to 4024 proteins in 434 species: Archae - 1; Bacteria - 1259; Metazoa - 3608; Fungi - 2247; Plants - 291; Viruses - 90; Other Eukaryotes - 2716 (source: NCBI BLink).
Link
InterPro Scan - TAIR